Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1327 ATGCCCATCTTGTGGAACACTCAAGACATTGAAGAGGAAGTTGCAGGCTACTCCATGCCTAGCTTGGACTATCATCAAACAGCTCAAACAAATAATCTTTATTCAAGTTTTGATCTTATGCAAGATAATTTCGAAGTCAATAAAGATGACGGGAATATTTCCATGATTCTATCTGATAGCTATAAAAGAAACATAAAGAGCTCCAACAACAACGTTATGAGTTCAGTTTCCTCTGGTGATGATGAATCTCACAAGAATAAAGACGACGTCGTTCAATGTCACATCAATGAAACTGAAGATGACATCTCTCATCATCATAGCAATATTTCAGAACCTAATTATAAGCCTAATCATCATGCAAAGAGGAGTTTCAGGCTCATTTCAGAGAATACCAATAATGCACCAAAACCCAAGAAAACTAGATGTGATAATCACAACTTGTCATCATCATCATCATCATCATTATCTTCTTCTTCTTCAAACATAAATTTTCAGCAACCAAACTCATCAAGCATATCATTTAATTCAAGTATTGGCCAAGAGCCAGATCAAGAGGCTATAGCACAAATGAAGGAGATGATATATAGGGCTGCAGCTTTCAGGCCTATGAACTTTTTAGGGTTGGAGGAAGTGGAAAAGCCAAGAAGGAAGAATGTGAGAATATCATCAGATCCACAGACTGCGGCAGCAAGGCAAAGGAGAGAGAGAATAAGTGAGAGAATTAGGGTTTTGCAGAAGATAGTGCCTGGTGGAAGCAAGATGGACACAGCTTCGACGCTTGATGAAGCTGCAAATTATCTCAAGTTTCTTAGGTCACAGGTCAAAGCATTGGAAAGTCTAGGGGACAATAAGGTTCATTTTTCTATGAACTGTACTCCATTATTCTCTTTTACAAACCCTAGTCATTATCATAATTAA 918 0.378 MPILWNTQDIEEEVAGYSMPSLDYHQTAQTNNLYSSFDLMQDNFEVNKDDGNISMILSDSYKRNIKSSNNNVMSSVSSGDDESHKNKDDVVQCHINETEDDISHHHSNISEPNYKPNHHAKRSFRLISENTNNAPKPKKTRCDNHNLSSSSSSSLSSSSSNINFQQPNSSSISFNSSIGQEPDQEAIAQMKEMIYRAAAFRPMNFLGLEEVEKPRRKNVRISSDPQTAAARQRRERISERIRVLQKIVPGGSKMDTASTLDEAANYLKFLRSQVKALESLGDNKVHFSMNCTPLFSFTNPSHYHN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1327 305 MobiDBLite consensus disorder prediction 66 87 - -
Mibi11g1327 305 SMART finulus 227 276 IPR011598 GO:0046983
Mibi11g1327 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 279 IPR036638 GO:0046983
Mibi11g1327 305 MobiDBLite consensus disorder prediction 130 180 - -
Mibi11g1327 305 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 51 296 IPR045843 GO:0003700|GO:0006355
Mibi11g1327 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 270 IPR011598 GO:0046983
Mibi11g1327 305 Coils Coil 260 280 - -
Mibi11g1327 305 Gene3D - 224 286 IPR036638 GO:0046983
Mibi11g1327 305 MobiDBLite consensus disorder prediction 144 180 - -
Mibi11g1327 305 Pfam Helix-loop-helix DNA-binding domain 229 270 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1327 Mibi-ChrMibi11 32126601 32127518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1327 121 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 64.375 3.96e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi11g1327 HLH 1.1e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi11g1327 11 32126601 32127518 Mibi04g0570 04 11030774 11032144 CCT
Mibi11g1327 11 32126601 32127518 Mibi11g1327 11 32126601 32127518 ECH