LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi11g1284	ATGCCGGTGCTTCGTAGTGGAGTTCGCAGGGGCCGAGAAGAAGCAGCGAAGAAGAAACAGCAACAGAAGAAGCAAGAGAAGCCTAATCTTATCAAAGAAGAAGAAGAAGAAGAAGCGATTGCAACGAGGACAAGAAGAAGAAGAGGAACTGCGGCGAAGGCGGCGGAGAAGCCGAAGAATAACAAGAAACAGAAACAGCAACAGAAGCCGGTGGTGGTGGTGGATGTGGTCAATGACAACGTAGTTGTTCCGGCCAAGGAGAAGGAGAAGGAGAAGGAGGAGAAAAGGGATTTTGAAGAAGCGGTTATTCGGGTCAGCGGTGGGGCCAGTGGCGGCGGCATCGTCGGAGATTGCGGAGAGGAGAAGGAAGAAATAGGGGAGAAGAAAATGGGTGATAATAATGATAGTGGAGGAGCAAGGAGTAATGAGAAGGCCAATGTTGGTGAAGAGGAGGGGAATGCGCCTCCTGTTCCAGATAGGGTTCATGTGGGTGGTTCGCCTTGGTATAAAGTAGAAAGGAAACTGGGGAAGGGTGGATTTGGACAAGTATATGTTGGCCGCCGTGTCACTGGTGCAAATATGAATGAGAGAACTGGACCTGGAGCTGTGGAGGTTGCTTTGAAATTTGAGCATAGAAGTAGTAAAGGATGTAACTATGGACCACCACACGAGTGGCAAGTGTACAACACTCTAGGTGGCAGCCATGGTGTGCCAAAAGTACACTACAAGGGCAGGCAAGGTGACTATTATATCATGGTCATGGATATGCTGGGACCTAGCTTATGGGATGTGTGGAACAATAACTCCCATTCAATGTCCGCCGAAATGGTTGCATGCATTGCCATTGAAGCAATATCCATACTGGAGAAGATGCACTCTCGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTTCTCCAGGGACTGCAGATGAGAAGAGGTTGTTTCTGGTTGATCTCGGATTAGCATCTAGATGGCGGGATAATTCAACAGGTTCACATGTGGAATATGACCAAAGGCCAGATGTTTTTAGGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCCAGCAGGAGGGATGATCTGGAATCCCTCGCTTATACATTGGTTTTCCTTCTGCGAGGTCGTCTCCCTTGGCAAGGGTTCCAGGGAGAAAACAAAGGTTTTTTGGTTTGCAAGAAGAAGATGGGAACAACTCCAGAGTGTTTATGTTGCTTCTGCCCCCAGCCTTTTAAGCTTTTTGTTGAACATGTTGTAAATTTGAAGTTTGACGAGGATCCTAATTATGCAAAATACATTTCTCTGTTTGATGGGATTGTTGGTCCAAATCCAGACATTAGACCAATTAATACAGAAGGTGCACAAAAGCTCATTGGTCATAAGAGAGGTCGGTTGGCCATGGAAGAAGAGGACGATGAACAACCGAAAAAGAAGTTCCGAATGGGTCTACCTGCAACACAGTGGATAAGTATATATAATGCTCGCAGACCAATGAAACAAAGATATCACTACAATGTGTCAGATGGAAGGCTTCCCCAGCACATCGAAAAGGGAAATGAGGATGGCTTATATATAAGCAGTGTGGCTTCATGTACGAACCTGTGGGCGATAATCATGGATGCAGGCACTGGTTTCTCTGAACAAGTTTACGAACTCTCTCCTAACTTTCTCCATAAGGAATGGATAATGGAGCAGTGGGAAAAAAGTTTCTACATCAGTGCAGTTGCTGGAGCTACAAATGGGAGCTCATTAGTAGTCATGTCTAAGGGTACACCATATGTACAGCAATCTTACAAAGTTAGCGATACATTTCCTTTCAAGTGGATTAACAAAAAATGGAGGGAAGGTTTCTATGTTACTGCGATGGCTACCTCAGGGGTCAGATGGGGCGTCGTCATGTCACGTGGTGCAGGATTTTGTGACCAGGTGGTTGAACTGGATTTTCTTTATCCCAGCGAAGGGATTCACAAGCGTTGGGATCACGGATACCGCATCACAGCAACTGCCGCAACTTGGGACCAGGCCGCTTTTGTGCTCAGTGTCCCGAGGAGGAAGCCTGGAGATGAAACACAGGAAACCCTGAGGACTACTGTATTTCCTAGTACGCATGTGAAGGAGAAATGGGCAAAGAACCTGTATATTGCATCAGTGTGCTATGGGCGAACTGTTTCTTGA	2202	0.4664	MPVLRSGVRRGREEAAKKKQQQKKQEKPNLIKEEEEEEAIATRTRRRRGTAAKAAEKPKNNKKQKQQQKPVVVVDVVNDNVVVPAKEKEKEKEEKRDFEEAVIRVSGGASGGGIVGDCGEEKEEIGEKKMGDNNDSGGARSNEKANVGEEEGNAPPVPDRVHVGGSPWYKVERKLGKGGFGQVYVGRRVTGANMNERTGPGAVEVALKFEHRSSKGCNYGPPHEWQVYNTLGGSHGVPKVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHSMSAEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGSPGTADEKRLFLVDLGLASRWRDNSTGSHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGFQGENKGFLVCKKKMGTTPECLCCFCPQPFKLFVEHVVNLKFDEDPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEEEDDEQPKKKFRMGLPATQWISIYNARRPMKQRYHYNVSDGRLPQHIEKGNEDGLYISSVASCTNLWAIIMDAGTGFSEQVYELSPNFLHKEWIMEQWEKSFYISAVAGATNGSSLVVMSKGTPYVQQSYKVSDTFPFKWINKKWREGFYVTAMATSGVRWGVVMSRGAGFCDQVVELDFLYPSEGIHKRWDHGYRITATAATWDQAAFVLSVPRRKPGDETQETLRTTVFPSTHVKEKWAKNLYIASVCYGRTVS	733

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi11g1284	733	ProSiteProfiles	Protein kinase domain profile.	169	472	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi11g1284	733	FunFam	casein kinase 1-like protein HD16	142	489	-	-
	Mibi11g1284	733	Gene3D	Transferase(Phosphotransferase) domain 1	138	489	-	-
	Mibi11g1284	733	SMART	serkin_6	169	467	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi11g1284	733	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	296	308	IPR008271	GO:0004672\|GO:0006468
	Mibi11g1284	733	SUPERFAMILY	Protein kinase-like (PK-like)	169	449	IPR011009	-
	Mibi11g1284	733	CDD	STKc_CK1	169	445	-	-
	Mibi11g1284	733	PANTHER	CASEIN KINASE-RELATED	162	695	-	-
	Mibi11g1284	733	MobiDBLite	consensus disorder prediction	1	73	-	-
	Mibi11g1284	733	MobiDBLite	consensus disorder prediction	7	63	-	-
	Mibi11g1284	733	ProSitePatterns	Protein kinases ATP-binding region signature.	175	208	IPR017441	GO:0005524
	Mibi11g1284	733	Pfam	Protein kinase domain	169	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi11g1284	733	MobiDBLite	consensus disorder prediction	126	162	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi11g1284	Mibi-ChrMibi11	30566949	30572189	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi11g1284	288	445	MAP Kinase Kinase Kinase	AT5G50180	26.875	2.39e-08	54.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Mibi11g1284		Pkinase	1.2e-16	CL0016