Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1280 ATGGAAGTAGCGGAGTGTTATGTCGGTGGCTTTTTCTCCGCCGGAGGAGAACAATTCTCGCCGGAGAATCGCCATAACAATGGTGCCGACCACCACCATAACAAGTCCGGCGAGCCTTTCGCCATTGACGACCTCCTTGACTTCTCCAACGCCGACGCCATGATCATGTCCGACGGTTTCTTCGATAACGCCGCCGCCGGTAACTCCACCGACTCCTCCACCGTCACCGCCGTTGACAGCTGTAACTCCTCCGTCTCCGGCGGCGACAACAACCATCAACATTTCTACAGTGGCTTCGCCGATCCTCAATTATCCGGAGAACTCTGTGTTCCGTATGATGATTTGGCTGAACTGGAATGGCTATCGAATTTCGTGGAAGACTCATTTTCTGTTGAAGATGAGCTGAAAACTCTCCACATCCTCTCCGGTAACACTGTTTCCGGCGCCGGAACTAAACCTCAGACGCCGGAGTCGTCATCTTCCTCCGAAACAATTCCTTCCTTCGCCGGCGACACCAGCCGGAATAACGGTCCGATCTTCCATCCGGAAACTCCTCTTCCAGGTAAAGCTCGGAGCAAGCGCACACGCGCCGCCCCGGGGGACTGGTCCACGCGCCTCCTCAACCTCATAACACCGCCGCCGCCGGAAACGACGGTTCCGGCACAGGCGCAAGCGAATCCGGTGACGGCGGCGAAGAAAAGAGAGAGTTCAAAAAATAATAATAATAATGATAGTAATAATAATTCGGAGCATTCTTCTGGCCGTAAATGCCTGCATTGTGCTTCAGAGAAGACTCCACAATGGCGAACTGGACCAATGGGACCGAAAACTCTGTGTAATGCTTGTGGAGTTCGGTACAAGTCAGGGAGGCTTGTGCCGGAGTATCGGCCGGCGGCGAGTCCGACTTTTGTGTCGTCAAGGCATTCGAATTCTCATAGGAAGGTGATGGAGATGAGGAGGCAGAAGGAAATGCAGAGGCAGCAACAGCATCATCATCATCATCATCAATTGGTTAGTCATCATCAGGGTTCAATTTTTGGAGATGAGTTCTTAATCAATCATTCTAATGGTCCTGATTATAGGCACATGATTTAG 1095 0.5187 MEVAECYVGGFFSAGGEQFSPENRHNNGADHHHNKSGEPFAIDDLLDFSNADAMIMSDGFFDNAAAGNSTDSSTVTAVDSCNSSVSGGDNNHQHFYSGFADPQLSGELCVPYDDLAELEWLSNFVEDSFSVEDELKTLHILSGNTVSGAGTKPQTPESSSSSETIPSFAGDTSRNNGPIFHPETPLPGKARSKRTRAAPGDWSTRLLNLITPPPPETTVPAQAQANPVTAAKKRESSKNNNNNDSNNNSEHSSGRKCLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSSRHSNSHRKVMEMRRQKEMQRQQQHHHHHHQLVSHHQGSIFGDEFLINHSNGPDYRHMI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1280 364 PANTHER GATA TRANSCRIPTION FACTOR 26 333 - -
Mibi11g1280 364 MobiDBLite consensus disorder prediction 221 255 - -
Mibi11g1280 364 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 253 315 - -
Mibi11g1280 364 CDD ZnF_GATA 256 303 IPR000679 GO:0006355|GO:0043565
Mibi11g1280 364 FunFam GATA transcription factor 246 333 - -
Mibi11g1280 364 PIRSF Txn_fac_GATA_plant 20 345 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mibi11g1280 364 SMART GATA_3 251 301 IPR000679 GO:0006355|GO:0043565
Mibi11g1280 364 Pfam GATA zinc finger 257 290 IPR000679 GO:0006355|GO:0043565
Mibi11g1280 364 ProSiteProfiles GATA-type zinc finger domain profile. 251 287 IPR000679 GO:0006355|GO:0043565
Mibi11g1280 364 MobiDBLite consensus disorder prediction 144 179 - -
Mibi11g1280 364 ProSitePatterns GATA-type zinc finger domain. 257 282 IPR000679 GO:0006355|GO:0043565
Mibi11g1280 364 Gene3D - 251 301 IPR013088 GO:0006355|GO:0008270
Mibi11g1280 364 MobiDBLite consensus disorder prediction 144 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1280 Mibi-ChrMibi11 30494574 30496023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1280 40 364 C2C2-Gata Transcription Factor Family AT4G32890 46.828 1.06e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi11g1280 GATA 3.4e-14 CL0167