Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1271 ATGGGGTCTCATCGAAACGGTTATTTCTTAGATGGGGGCCCAGCTGCTTCTCCCTCTGATGATAAATACTTTGATATTAGCGCCATTTTGGAAGAAAGGCATTACAATGTTTCAAACATGCACCTACGCGGGGAAGCACATGCAACTACTTCTAGATATGATTTCTTTTTTTTTGCCAGATCTAGATATGATTTCTTCAACATCCCAAGCAAGTTAATAAAGAAAGCAACAAGTTATATTCTTTGTATTCTTAATGTTCCTGAAGGAGATAAAAAATCTATGGCGCAACAAATTTTAGATTATGCGGAGAACTTAGCTAACAAAACAGAAGGTGGCTTTAATAGTTTCTTTTTTGTGGCGGAGATTGATTATTTTTCCAACGACAATGACAATTGTGATCAAGCTATAAAAACATCTATGAAGGGTCAAACTTGCGAGTTAAAGCCTGCAAGTAAAGCATTTGACAATAAGTTGAAGGGAGTGAAGCTTCAACAAAAAGAAGGGCTAAGAAGTTGTGCAATTTGTTTCCAAGATTGTGGGATTGATACGGTTAAGACTCCATGTTCTCATTTCTTTCATGGAAATTGTATTCTTCGATGGCTGTTGATGAAGAACTCTTGCCCCTTATGTCGTCTCGAAATTCCTTCACATGAGATATTGATCGATTAG 669 0.3707 MGSHRNGYFLDGGPAASPSDDKYFDISAILEERHYNVSNMHLRGEAHATTSRYDFFFFARSRYDFFNIPSKLIKKATSYILCILNVPEGDKKSMAQQILDYAENLANKTEGGFNSFFFVAEIDYFSNDNDNCDQAIKTSMKGQTCELKPASKAFDNKLKGVKLQQKEGLRSCAICFQDCGIDTVKTPCSHFFHGNCILRWLLMKNSCPLCRLEIPSHEILID 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1271 222 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 215 - -
Mibi11g1271 222 SUPERFAMILY RING/U-box 171 216 - -
Mibi11g1271 222 ProSiteProfiles Zinc finger RING-type profile. 172 211 IPR001841 -
Mibi11g1271 222 SMART ringv_2 171 211 IPR011016 GO:0008270
Mibi11g1271 222 Pfam Ring finger domain 171 211 IPR001841 -
Mibi11g1271 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 219 IPR013083 -
Mibi11g1271 222 SMART ring_2 172 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1271 Mibi-ChrMibi11 30396139 30396807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1271 137 219 C3H Transcription Factor Family AT3G02340 35.227 1.36e-13 67.0