Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1256 ATGGACTCATCAACTGATGATAATCCTACCCCATCTTTTTCCTTTAGAAGCACAGCTCAAACCACCACATTCTTGAGAAGCCATTCCACAAAAGAGCTCTCTCCTTTCTCCGATTTCCTTCACTCACCGCCTCGCCTTTCGTGTCCTACGCTCTCCCGTAGTCTTCAAGCCTCTCCTCTCCATCATCATCATCCTCACACCACAAACACAACAAAGCTCTCTGCAGATTCTTCTTCTGATGAACCACAAACCACATACCATTGTGCCTCCTCTGTTCTCAGAAAAGATGGTCAGATCCTTTCCATTTCATTGTCAAATGGATTAGTATACACTGGTTCAGATTCAAATGTTATTAGGGTCTGGAAGCTTCCTGAGTTTACAGAATGTGGACAGCTCAGAACCAAGGCTTGTAGAGTTGTGGCAATAGAAGTTTCTAATGATACAGTATATGCAGCTTATGGAGATGGAAAGATTAGGATTTGGAGAAGAACATGGGATAGAGTTTTGAAACATGTTCGTTTGGGAACAATCCCAAAGAAAGTTGGTTCTGTTCGGAGTTACATTCTGGGCAGAGACAAGACACTGAAGCATAAAGCTCAAATCACATCAATGGCAATCAACACAGCAGAAGACATAATATACACATCTTCCATAGACAAAACAGTGAAAGTATGGCGAATCTCAGACCTCAAATGCATCGAAACCATAAAAGCACACTCTGAACCAATCAACGCCGTCATGGTCGGCGACGACGACGGCGTTCTCTACACAGCCTCCGACGACGCCACCGTCAGAGTATGGCGGCGCAATTTCTGCAGCCACGACATGCCTCATTCCCTCACAACAACCCTTCACGCAAAAAACTCACCCGTCAAAACCCTAACCCTAGCCGCCGACGGCGCCGCCGTCTACGGCGGTTGCTCCGACGGCTACATCCACTTCTGGTCAAAGGGTTGGTTCGTTGGTCAACTTCAGTACGGAGGGTCAATTCAAGGTCATACACATGCAGTTTTGTGTTTAGCTAGTGTGGGGAATTATGTTGTTAGTGGTTCAGCTGATTCAACATGTAGGATTTGGGGAAGAGGTGAAGATGGGAATAAGCATGATTGTTTGGCTGTTTTGGTTGGTCATAGAGGGCCAATTAGGTGTGTTGCAGCTATTGTTGGAGGGAGATTTGGGGAAGATGGTATTGGTAGTGAGGATGGTTGTAGTATTTGTAGTGGAAGTCTTGATGGTGTTTTGAAGCAATGGCGTGTGGCTAAAACAAGGAAGTGGGATAGTAATCAATGTTCATCAATACAAGATGATGATGGGGGCAAGTATTTTGAACTTTGA 1335 0.4517 MDSSTDDNPTPSFSFRSTAQTTTFLRSHSTKELSPFSDFLHSPPRLSCPTLSRSLQASPLHHHHPHTTNTTKLSADSSSDEPQTTYHCASSVLRKDGQILSISLSNGLVYTGSDSNVIRVWKLPEFTECGQLRTKACRVVAIEVSNDTVYAAYGDGKIRIWRRTWDRVLKHVRLGTIPKKVGSVRSYILGRDKTLKHKAQITSMAINTAEDIIYTSSIDKTVKVWRISDLKCIETIKAHSEPINAVMVGDDDGVLYTASDDATVRVWRRNFCSHDMPHSLTTTLHAKNSPVKTLTLAADGAAVYGGCSDGYIHFWSKGWFVGQLQYGGSIQGHTHAVLCLASVGNYVVSGSADSTCRIWGRGEDGNKHDCLAVLVGHRGPIRCVAAIVGGRFGEDGIGSEDGCSICSGSLDGVLKQWRVAKTRKWDSNQCSSIQDDDGGKYFEL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1256 444 CDD WD40 97 418 - -
Mibi11g1256 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 267 IPR001680 GO:0005515
Mibi11g1256 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 267 - -
Mibi11g1256 444 MobiDBLite consensus disorder prediction 57 83 - -
Mibi11g1256 444 Gene3D - 274 440 IPR015943 GO:0005515
Mibi11g1256 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 359 IPR001680 GO:0005515
Mibi11g1256 444 SUPERFAMILY WD40 repeat-like 102 427 IPR036322 GO:0005515
Mibi11g1256 444 SMART WD40_4 229 268 IPR001680 GO:0005515
Mibi11g1256 444 SMART WD40_4 367 418 IPR001680 GO:0005515
Mibi11g1256 444 SMART WD40_4 125 162 IPR001680 GO:0005515
Mibi11g1256 444 SMART WD40_4 277 316 IPR001680 GO:0005515
Mibi11g1256 444 SMART WD40_4 323 360 IPR001680 GO:0005515
Mibi11g1256 444 SMART WD40_4 188 226 IPR001680 GO:0005515
Mibi11g1256 444 SMART WD40_4 85 122 IPR001680 GO:0005515
Mibi11g1256 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 228 - -
Mibi11g1256 444 Pfam WD domain, G-beta repeat 328 359 IPR001680 GO:0005515
Mibi11g1256 444 Pfam WD domain, G-beta repeat 231 267 IPR001680 GO:0005515
Mibi11g1256 444 Pfam WD domain, G-beta repeat 195 225 IPR001680 GO:0005515
Mibi11g1256 444 Pfam WD domain, G-beta repeat 369 417 IPR001680 GO:0005515
Mibi11g1256 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 235 IPR001680 GO:0005515
Mibi11g1256 444 Gene3D - 52 167 IPR015943 GO:0005515
Mibi11g1256 444 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 37 421 IPR045182 -
Mibi11g1256 444 Gene3D - 182 273 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1256 Mibi-ChrMibi11 30222318 30225733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1256 197 442 U-box Gene Family AT1G04510 27.381 4.83e-12 65.9