Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1239 ATGTCCGACCATACTCCTCCTAACTACTTTCCCTCCCCTGCTCTCTCCCTCAGTCTTGCGGGAATATTTCGCCGTGGTGAGGCGGCACCGTCTGTGGCGGAGGAGGCCGGAGAGGAGGCAAGTGGCGGCGGAGGGCGGCGAGGCAATATTCATCATGAGATTAGCAGCGAGAATTCTGGCCTCAACGGTAGATCGTCTAAATCGGACGACGATGGCGGCTTCGACGAAGAAGCCGAGCCGGAAGATGTTGAAGGTGACGGCGGAGACAATAAGGACAAGAAGAAGAGGAAGAGGAAGAGATATCATAGGCACACTGCTGAGCAGATCAGAGAAATGGAAGCACTTTTCAAAGAGTCGCCACATCCTGATGAGAAGCAGAGACAACAACTTAGCCAGCAATTAGGCCTTGCTCCTAGGCAAGTCAAGTTTTGGTTCCAAAATCGCCGAACCCAAATCAAGGCTATACAAGAGCGTCATGAGAATTTTTTGCTGAAGTCAGAAATCGATAAACTTAGAGAGGAAAATGAGGCCTTAAGAGGGATCATGAACAAATCTTGTTGCCCCAACTGTGGTGTTGCCACCATGAATTCTTCAGATGCTTCCATGCCTCCTGAAGAACACCAACTACGTGTAGAAAATGCCAAACTCAAAGCTGAGATTGAGAAGCTTCGAACGGCAATAGCGAAGGGCCCACCGGGGGCAACAACGACATCACCTTCAAGCCCTATGGGGAATGAACAAATGGAGAACAAAAGCTGTATGGAAATTTACAGTGGAATATTTGGACTTGAGAAGACAAGGATAATGGAGTTAGTTAACAAAGCAATGGAAGAGCTCATAATGATGGCTATCATTCAAGAACCATTATGGGTTCGTAGTGTTGAGACTGGTCGCCAAATACTTAATTATGATGAATATATTAAAGAGTTCAAAGTTGAACACTCTTCATTGTCAAAGAGATCATCCTACAATATTGAAGCCTCGAGAGAAACTGGGGTTGTTTTTCTGGATCTCCCTCGTCTTCTTCAAATCTTCTTGGACGTGAATCAATGGAAGGAAATGTTTCCGAACTTAATATCCAAGGCAGCCATTGTTGATGTTATTTGTAGTGGTGAAGGTGCCAACAGGGATGGTGCCGTGCAACTGATGTTTAACGAGGTGCAAATGGTGACACCAATGGTGGGGAGTAGAGAAGTGTATTTTGTGAGGTATTGCAAGAAATTGAAGGAAGAAGAGTGGGCAATCGTGGATGTATCCATAGATAAAGTACAAGACAGTAGTCTTGAAGCTTCTCTCTTAAAATGCAGAAAGCGCCCTTCTGGCTGCATCGTTCAAGATACTTACAATGGCCACTGCAAGGTGACATGGGTGGAGCACATAGAATGTGAGAAGAGCACAATTCACACAATGTACCGGAGCATAGTGAAGAGTGGGTTGGCATTCGGGGCGAGGCGATGGCTAGCCACTTTGCAAACACAATGCCAGCGGCTTGTGTTCTTGATGGCGACGAACGTGCCAATGAAGGAGTCGATGGGAGTAGGGACGATGGCAGGGAGGAAGAGTGTGATGAAGTTAGCACAAAGAATGAGCAAGAGTTTTTGCCATGCCGTAGGGGCTTCAAGCTTCCATACATGGACCAAGTTTAGTGGTGAGAATGGATTAGATATTAGGATTAGCTCAAGAAAGAACTTGAATGACCGTGGTGAGCCTCTAGGACTTATCTTATGTGCTGTTACTTGCTCCTGGCTTCCACTCTCTCCTCATCTTCTTGTAGATTTTCTAAAGGATGAAACTCGCCGAACTCAGTGGCATGTGACCAGTGGCGGTGAGCACGTGCAGTCCATCGTAAACTTGGCCAAAGGAAAAGATCGAGGCAACGCCGTAACCATCCTGGAGGTAAGATCAAAAGAGGAGAGTAACAGTACGTGGATAATTCAAGACAGCAGCACAAGTACGTACGAGTCAATGGTGGTGTATGCTCCGGTGGACATGACTCGCATGAAGTCGGTGATTGCGGGCTGCGACTCCACCGACGTCCCGATCCTTCCGTCGGGGTTCTCCGTCGTCCCCGACGGAATGGAGGCCATGAGGCCATTGATGATCACTACTTCATCATCATCAATGCATGAAGGAGAAGAAGAAAAGAGCACAGAAGGAGGGTCTTTGCTTACCATGGCATTTCAGGTCATAGTAAGTACATGTCCTTCTGATAAGTTAACACATGAGTCTCTTGAATCACTTGGTAGTGTCATGTCTTGTACTTTGAGGAATATAAGAACTTGTTTACACTGTGACGATACTTAG 2304 0.4666 MSDHTPPNYFPSPALSLSLAGIFRRGEAAPSVAEEAGEEASGGGGRRGNIHHEISSENSGLNGRSSKSDDDGGFDEEAEPEDVEGDGGDNKDKKKRKRKRYHRHTAEQIREMEALFKESPHPDEKQRQQLSQQLGLAPRQVKFWFQNRRTQIKAIQERHENFLLKSEIDKLREENEALRGIMNKSCCPNCGVATMNSSDASMPPEEHQLRVENAKLKAEIEKLRTAIAKGPPGATTTSPSSPMGNEQMENKSCMEIYSGIFGLEKTRIMELVNKAMEELIMMAIIQEPLWVRSVETGRQILNYDEYIKEFKVEHSSLSKRSSYNIEASRETGVVFLDLPRLLQIFLDVNQWKEMFPNLISKAAIVDVICSGEGANRDGAVQLMFNEVQMVTPMVGSREVYFVRYCKKLKEEEWAIVDVSIDKVQDSSLEASLLKCRKRPSGCIVQDTYNGHCKVTWVEHIECEKSTIHTMYRSIVKSGLAFGARRWLATLQTQCQRLVFLMATNVPMKESMGVGTMAGRKSVMKLAQRMSKSFCHAVGASSFHTWTKFSGENGLDIRISSRKNLNDRGEPLGLILCAVTCSWLPLSPHLLVDFLKDETRRTQWHVTSGGEHVQSIVNLAKGKDRGNAVTILEVRSKEESNSTWIIQDSSTSTYESMVVYAPVDMTRMKSVIAGCDSTDVPILPSGFSVVPDGMEAMRPLMITTSSSSMHEGEEEKSTEGGSLLTMAFQVIVSTCPSDKLTHESLESLGSVMSCTLRNIRTCLHCDDT 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1239 767 Pfam Homeodomain 98 153 IPR001356 GO:0003677
Mibi11g1239 767 ProSiteProfiles START domain profile. 261 499 IPR002913 GO:0008289
Mibi11g1239 767 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Mibi11g1239 767 FunFam Homeobox-leucine zipper protein HDG1 84 171 - -
Mibi11g1239 767 CDD START_ArGLABRA2_like 265 495 - -
Mibi11g1239 767 Pfam START domain 271 496 IPR002913 GO:0008289
Mibi11g1239 767 Coils Coil 206 226 - -
Mibi11g1239 767 SMART START_1 270 496 IPR002913 GO:0008289
Mibi11g1239 767 Gene3D - 270 496 IPR023393 -
Mibi11g1239 767 SMART HOX_1 96 159 IPR001356 GO:0003677
Mibi11g1239 767 CDD homeodomain 102 153 IPR001356 GO:0003677
Mibi11g1239 767 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Mibi11g1239 767 FunFam Homeobox-leucine zipper protein GLABRA 2 270 495 - -
Mibi11g1239 767 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 95 762 IPR042160 -
Mibi11g1239 767 SUPERFAMILY Homeodomain-like 87 156 IPR009057 -
Mibi11g1239 767 SUPERFAMILY Bet v1-like 264 496 - -
Mibi11g1239 767 Gene3D - 85 165 - -
Mibi11g1239 767 MobiDBLite consensus disorder prediction 26 108 - -
Mibi11g1239 767 SUPERFAMILY Bet v1-like 518 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1239 Mibi-ChrMibi11 29854935 29861487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1239 54 766 Homeobox Transcription Factor Family AT1G79840 56.250 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi11g1239 START 1.7e-54 CL0209