Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1192 ATGGATGTTATCTCTCCAGAACCAAATAGAAACTCCCAAACCGATAGATATCCTTTGCTGATGGAGCAGTCTGAAAGCCACCATCAGCATGTAATTGACATCACCAGGAATGGTGATGCTTTGTCCAACTCATCTCATGTTGCTCAACTTCCTGAAATACATTTAACGCAGAATGAAGATCAACAGTCCAGTGGTACACGAGAACCTACTCATCAAACGTCTTCCTCATCTAGATTAAACTCTAGAAATTCTTCATCAACTAGAGGTGAGGGCTATCGTCATCGAAGAAGGAATCCATTAAATTCTGGACTATGGATTTCAGTTGAGCTTGTTGTCACTGTGGGTCAGATCATAGCATCTATAGTTGTCTTGTCATTGTCGAGGAACGAAAGTTCACAAGCCCCATTATTTGCTTGGGTCGTGGGATATACATCTGGCTGTGTTGCCACACTTCCTATTTTATACTGGCGTTATCGAAGCCATCGTCAAAGTACTGAACAAGATACATCTCAACAATCTCAAGGATCTTCTAGAAGTGATCATCCGTTACCTACCTCATACTCTGCCATCTCCAATGCTCATGTGTCTGATGAGGAGAATAGTCATGTGACACAATCAGCTGCTAGAAACACCAGAATTCCTGGAGCTTTTTTTTCTAGGCTTAACGGATTAGTAGATCATTTCAAAATGGCCTTAGATTGCTTCTTTGCTGTTTGGTTTGTTGTGGGCAACGTGTGGATCTTTGGAGGCCACTCTTCTCCTTCGGATGCACCAAAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGTTGCATTGGATATGCTATGCCATTTATCCTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTCTGGGCATTCGGGAGGATTTTACTCAAACTAGAGGTGCAACAGTAGAGTCTATCAATGCCCTGCCAATTTACAAGTTCAAATTGAAGAAAACTGAAAATAATGACAATCAGGATGTCAACACAGCTGTAGAAGAAGGTGGCATCTTCGCTGCAGGGACAGAAAAGGAGCGGGCAATATCTGGGGAAGATGCTGCTTGTTGCATTTGCTTGGCAAAATATGCAGACAATGATGATCTTAGGGAGTTACCCTGTCTTCATTTCTTTCACGTAGAATGCGTTGACAAATGGTTGAAGATAAACGCATCATGTCCTCTTTGTAAAAGTGATGCTGGCAAGATTTGTGGAGAAGGGTCTCCTTCAGCTGGGGACTCCAGTTAG 1263 0.4196 MDVISPEPNRNSQTDRYPLLMEQSESHHQHVIDITRNGDALSNSSHVAQLPEIHLTQNEDQQSSGTREPTHQTSSSSRLNSRNSSSTRGEGYRHRRRNPLNSGLWISVELVVTVGQIIASIVVLSLSRNESSQAPLFAWVVGYTSGCVATLPILYWRYRSHRQSTEQDTSQQSQGSSRSDHPLPTSYSAISNAHVSDEENSHVTQSAARNTRIPGAFFSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFTQTRGATVESINALPIYKFKLKKTENNDNQDVNTAVEEGGIFAAGTEKERAISGEDAACCICLAKYADNDDLRELPCLHFFHVECVDKWLKINASCPLCKSDAGKICGEGSPSAGDSS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1192 420 CDD RING-H2_RNF111_like 361 404 - -
Mibi11g1192 420 ProSiteProfiles Zinc finger RING-type profile. 361 402 IPR001841 -
Mibi11g1192 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 408 IPR013083 -
Mibi11g1192 420 SMART ring_2 361 401 IPR001841 -
Mibi11g1192 420 SMART ringv_2 360 402 IPR011016 GO:0008270
Mibi11g1192 420 MobiDBLite consensus disorder prediction 57 87 - -
Mibi11g1192 420 Pfam Ring finger domain 360 402 IPR001841 -
Mibi11g1192 420 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 404 - -
Mibi11g1192 420 SUPERFAMILY RING/U-box 354 407 - -
Mibi11g1192 420 MobiDBLite consensus disorder prediction 57 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1192 Mibi-ChrMibi11 29243697 29246738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1192 1 407 C3H Transcription Factor Family AT1G80400 57.488 7.42e-166 470
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi11g1192 11 29243697 29246738 Mibi11g1192 11 29243697 29246738 ECH