Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1190 ATGCCGTCGCCGGAAGATTCGCTGAACTTGAAGGACACGGAGCTCACCTTAGGCCTTCCAGGCGCCAAATCCAGCAACAAACGTGGATTCTCCCACACTATTGATGATCATGATGATGGTGGTGGTGAATCCTCCATTATATCAACATCATCTGCTAATAAATCTCCCACTCCAAAGGCACAGGTGGTTGGGTGGCCCCCGGTGAGGGCTAGCAGGAAGAGCGTGATGAAGAAATGCAAGTACGTGAAGGTGGCGGTGGACGGAGCTCCATATCTCAGAAAAGTCGATCTTGAATTGTATCATACATATGACCAGCTTCTTTCCTCTCTAGAATCCATGTTCTCCTGTTTTCCCATCCGGAATGATTTGAAGAAGAATGATGATGAGGGTGGACAGAATGATGATGGAGGTGAGTACGTACCCACCTATGAGGACAAAGATGGCGACTGGATGATGCTTGGCGATGTCCCCTGGGACATGTTTGTTGAATCCTGCAAACGAATAAGGTTGATGGTGAGTTCTGAGGCTACTGGCTTAGCTCCAACAAGAGGTCGTTCTTCAAAGTGA 567 0.4832 MPSPEDSLNLKDTELTLGLPGAKSSNKRGFSHTIDDHDDGGGESSIISTSSANKSPTPKAQVVGWPPVRASRKSVMKKCKYVKVAVDGAPYLRKVDLELYHTYDQLLSSLESMFSCFPIRNDLKKNDDEGGQNDDGGEYVPTYEDKDGDWMMLGDVPWDMFVESCKRIRLMVSSEATGLAPTRGRSSK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1190 188 Pfam AUX/IAA family 77 181 IPR033389 -
Mibi11g1190 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 177 IPR003311 GO:0005634|GO:0006355
Mibi11g1190 188 Gene3D - 74 185 - -
Mibi11g1190 188 SUPERFAMILY CAD & PB1 domains 71 172 - -
Mibi11g1190 188 MobiDBLite consensus disorder prediction 43 58 - -
Mibi11g1190 188 ProSiteProfiles PB1 domain profile. 79 173 IPR000270 GO:0005515
Mibi11g1190 188 FunFam Auxin-responsive protein 74 183 - -
Mibi11g1190 188 MobiDBLite consensus disorder prediction 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1190 Mibi-ChrMibi11 29196122 29197305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1190 16 181 B3 DNA Binding Superfamily AT4G23980 27.219 1.95e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mibi11g1190 AUX_IAA 2.7e-44 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi11g1190 11 29196122 29197305 Mibi11g1190 11 29196122 29197305 ECH