Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1186 ATGGGCGGGACTTCATTGGTGGGCTTGCAAGAACACATCAAATTGGCCAGAGACTATGCTGTTGAAGGACTCTATGATAGCTCTATCATCTTCTTCGATGGCGCTGTTGCACAGATCAACAAGCACCTAAGCACCATTGATGACCCTTTACTTCGTACGAAATGGATGAATGCTAAGAAAGCCATTTCTGAAGAAACAGAAGTTGTAAAGCAATTGGATGCAGAGAGGAGAGCTTTTAAAGAAACCCCAACTGGTAGACGGCCTCCTTCGCCTCCGATATCTACTAAATCATCGTTTGTTTTTCAACCATTAGATGAGTATCCAACCTCATCAAGTGGTCCAATGGATGATCCTGATGTCTGGAGGCCACCCAGTCGAGATAATTCAAGTAGAAGACCTACTAGATCTGGTCAAGTGGGCACTCGGAAGTCACCGCAAGATGGGAGTTGGGGTCGAGGTTCTACAAGAACTGGTGCTACTGGGCGTGGGGCAAAGAGTGGTGCTACAAGCAGGGTTAACTCAGGTACCCGGGCATCAACTACAGGAAAGAAAGGCACTGGTTCTGGAAAGTCTAGCAAGGCAGATTCAGTTAATGGTGATTCTGAAGATGGTAAATCAAGGAAAGGGCAATATGAAGGTCCGGATCCAGACTTGGCTGAGATGCTGGAAAGGGATGTGTTAGAAACAACTCCTGGGGTGAGATGGGATGATGTTGCTGGATTAACTGAAGCTAAAAGACTTTTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTTCTTATGTTTGGTCCACCAGGAACTGGGAAGACATTGCTGGCTAAAGCTGTTGCTACTGAATGTGGGACCACTTTCTTCAATGTTTCCTCTGCTACTTTGGCTTCAAAATGGCGTGGAGAAAGCGAGCGGATGGTGCGATGTTTGTTTGATCTTGCAAGAGCCTATGCACCAAGTACGATTTTCATTGATGAGATAGATTCTCTATGCAATGCTCGTGGGGCATCTGGGGAGCATGAATCATCAAGAAGAGTAAAATCTGAACTTCTAGTTCAGGTTGATGGTGTAAATAATACTTCCACAAATGAGGATGGGACCCGAAAAATAGTAATGGTTTTGGCTGCCACTAACTTCCCATGGGACATAGATGAGGCTCTAAGGAGAAGACTGGAAAAGCGTATATACATCCCTCTTCCGAATTTTGAGAGCCGTAAAGAGCTTATTCGAATCAATTTGAAGACTGTAGAGGTGGCCCCAGATGTAAATATAGATGATGTGGCTCGCCGAACGGAGGGCTATAGTGGAGATGATCTGACGAATGTCTGTCGCGATGCTTCGTTGAATGGTATGCGTCGTAAGATAGCGGGAAAGACTCGGGATGAGATCAAAAACATGTCAAAAGATGAGATTTCAAAAGATCCAGTGGCCATGTGTGATTTTGAAGAAGCTTTGGCTAAGGTGCAACGGAGTGTTTCACAGGCTGACATTGAACGTCATGAGAAGTGGTTTGCTGAATTTGGATCTGCATAA 1563 0.4517 MGGTSLVGLQEHIKLARDYAVEGLYDSSIIFFDGAVAQINKHLSTIDDPLLRTKWMNAKKAISEETEVVKQLDAERRAFKETPTGRRPPSPPISTKSSFVFQPLDEYPTSSSGPMDDPDVWRPPSRDNSSRRPTRSGQVGTRKSPQDGSWGRGSTRTGATGRGAKSGATSRVNSGTRASTTGKKGTGSGKSSKADSVNGDSEDGKSRKGQYEGPDPDLAEMLERDVLETTPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALAKVQRSVSQADIERHEKWFAEFGSA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1186 520 PANTHER AAA DOMAIN-CONTAINING 25 519 - -
Mibi11g1186 520 CDD AAA 266 409 - -
Mibi11g1186 520 Pfam AAA+ lid domain 431 472 IPR041569 -
Mibi11g1186 520 MobiDBLite consensus disorder prediction 76 217 - -
Mibi11g1186 520 Gene3D - 230 511 IPR027417 -
Mibi11g1186 520 FunFam Katanin p60 ATPase-containing subunit A1 410 496 - -
Mibi11g1186 520 MobiDBLite consensus disorder prediction 196 217 - -
Mibi11g1186 520 FunFam Katanin p60 ATPase-containing subunit A1 230 398 - -
Mibi11g1186 520 MobiDBLite consensus disorder prediction 91 109 - -
Mibi11g1186 520 Pfam Vps4 C terminal oligomerisation domain 473 518 IPR015415 -
Mibi11g1186 520 SMART AAA_5 268 411 IPR003593 -
Mibi11g1186 520 Gene3D - 3 80 - -
Mibi11g1186 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 506 IPR027417 -
Mibi11g1186 520 MobiDBLite consensus disorder prediction 130 195 - -
Mibi11g1186 520 ProSitePatterns AAA-protein family signature. 381 400 IPR003960 GO:0005524|GO:0016887
Mibi11g1186 520 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Mibi11g1186 520 Gene3D - 410 496 - -
Mibi11g1186 520 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 520 IPR028596 GO:0008017|GO:0008568|GO:0051013
Mibi11g1186 520 Pfam ATPase family associated with various cellular activities (AAA) 272 409 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1186 Mibi-ChrMibi11 29140976 29145155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1186 224 512 Calmodulin-binding Proteins AT3G56690 39.597 4.36e-51 186