Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1148 ATGGCGCAGATTTTGCTCCATGGGACTCTCCATGTCACGATCTATGAGGTGGATAAGCTGAAGACTGGCGGTGGCAATATCTTCAGCAAGCTCAAGGAAAATCTTGAGGAAGCAGTTGGTTTTGGAAAGGGGGTTACAAAACTCTATGCAACCATCGATCTTGAGAAGGCCAGGGTTGGAAGGACTAGAATTCTTGAAAATGAACATTCCAACCCTAGGTGGTATGAGACATTTCACATTTATTGTGCTCACATGGCTTCTGATATTATATTCACTGTGAAAGATGATAATCCTATTGGGGCAACCTTAATTGGAAGAGCACATGTGCCTGTCACAGATGTCTTGGATGGCGAAGAAATAGATAGGTGGGTTGAAATCTTGGATAAGGACATGAATCCCATTCATGGTAATTCAAAAATCCATGTGAAACTGCAATATTTTGATATCACCAAAGATCGCAGCTGGTCTCGTGGTATCAGAAGTGCTAAATTTCCTGGAGTTCCATACACTTTCTTCTCACAGAGAAAAGGATGTAAGGTCTCTCTGTATCAGGATGCTCATATCCCAGATAAATTTGTCCCTGAAATACCTCTTGCTGGAGGTGAGCGATATGGCGCTCATAGATGTTGGGAGGATGTTTTTGATGCAATCACAAATGCCAAGCACTTAATATACATTACCGGTTGGTCTGTATATACTGAGATCCCCTTGGTAAGGGATAAAAGGAGGCCAAAGCCAGGGGGAGACATAACACTTGGTGAGCTCCTCAAGAAAAAGGCAAGTGAAGGTGTCAGGGTTCTAATGCTTGTTTGGGATGATAGAACATCTGTTGGTTTGTTAAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACTGAGCATTACTTCCAAGGCACTGATGTGCATTGTGTTTTATGCCCCCGCAATCCTGATGATGGGGGAAGCATTATTCAGGACTTGCAAATTTCTACCATGTTCACCCATCATCAAAAGATTGTGGTGGTGGACAGTGAATTGCCAAGTGGAGGATCGGACAAGCGAAGGATTGTTAGTTTTGTTGGGGGTATTGATCTCTGTGATGGTAGATATGATACTCCCTTCCATTCACTGTTCAGAACTCTGGACACAGCACACCATAATGACTTTCATCAACCCAACTTTCCTGGTGCTGCGATCACAAAAGGTGGCCCCAGGGAGCCTTGGCATGACATTCATTCCCGTCTCGAAGGACCCATTGCTTGGGATGTCTTATTTAACTTTGAACAACGATGGAGGAAGCAAGGTGGGAAGGATATACTTGTTCAGTTGAGAGAGCTTGAAGATGTCATCATTCCTCCATCCCCAGTTACGTTTCCTGATGATCATGAGACATGGAATGTTCAGTTATTTAGGTCCATCGATGGCGGAGCTGCTTTTGGGTTTCCGGAGACTCCTGAAGATGCGGCCAAAGCTGGGCTCGTTAGTGGGAAGGATAATATTATTGATCGCAGTATTCAAGATGCTTATATCAATGCCATTCGACGAGCAAAGGATTTCATCTATATTGAAAATCAGTACTTCCTTGGAAGCTCTTTTGCTTGGAGTGCTGATGATATCAAACCTGAGGACATAAATGCTTTGCATGTCATCCCAAAGGAGCTTTCACTTAAAATTGTTAGTAAGATTGAAGCTGGGGAAAGATTCACTGTATATGTTGTGGTCCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTGCAGGCAATATTAGACTGGCAGAGGAGGACAATGGAGATGATGTATAAAGATGTTATTCAGGCACTTAAGGCCAATGGAATTGATGATGATCCTCGTAACTATTTGACATTCTTCTGCCTCGGTAATCGTGAGTTGAAGAAACCTGGAGAGTATGAGCCTTCAGAAAGACCAGATCCTGATTCTGATTATCAGAGAGCTCAAGAGGCTCGGCGCTTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAGTACATAATCATAGGATCTGCCAACATCAACCAGAGGTCAATGGATGGTGCCAGGGACTCAGAGATTGCCATGGGTGCCTATCAACCCTATCATTTGGCTCACAGGCAACAGCCGGCACGAGGTCAGATCCATGGTTTCCGCTTGTCATTATGGTATGAGCACCTTGGCATGCTCGACAATTCCTTCCTCAAACCTGAAAGTGAAGAATGCATCAGGAAGGTGAACCAGGTGGCTAACAAGTACTGGGACCTCTATTCAAGTGAGTCTCTGGAACATGACCTTCCGGGACACCTTCTTCGCTATCCTATTGGGATTTCTGAGGAAGGAGAAATCACTGAACTGCCAGGATTTGAATGTTTCCCAGACACCAAGGCTCGTGTTCTTGGTGGCAAAGCTGACTACATGCCACCAATCCTTACAACTTAG 2427 0.4421 MAQILLHGTLHVTIYEVDKLKTGGGNIFSKLKENLEEAVGFGKGVTKLYATIDLEKARVGRTRILENEHSNPRWYETFHIYCAHMASDIIFTVKDDNPIGATLIGRAHVPVTDVLDGEEIDRWVEILDKDMNPIHGNSKIHVKLQYFDITKDRSWSRGIRSAKFPGVPYTFFSQRKGCKVSLYQDAHIPDKFVPEIPLAGGERYGAHRCWEDVFDAITNAKHLIYITGWSVYTEIPLVRDKRRPKPGGDITLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEHYFQGTDVHCVLCPRNPDDGGSIIQDLQISTMFTHHQKIVVVDSELPSGGSDKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHNDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDILVQLRELEDVIIPPSPVTFPDDHETWNVQLFRSIDGGAAFGFPETPEDAAKAGLVSGKDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSFAWSADDIKPEDINALHVIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDVIQALKANGIDDDPRNYLTFFCLGNRELKKPGEYEPSERPDPDSDYQRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLAHRQQPARGQIHGFRLSLWYEHLGMLDNSFLKPESEECIRKVNQVANKYWDLYSSESLEHDLPGHLLRYPIGISEEGEITELPGFECFPDTKARVLGGKADYMPPILTT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1148 808 Pfam C2 domain 8 126 IPR000008 -
Mibi11g1148 808 FunFam Phospholipase D delta 200 443 - -
Mibi11g1148 808 Gene3D Endonuclease Chain A 198 442 - -
Mibi11g1148 808 Pfam Phospholipase D C terminal 726 797 IPR024632 -
Mibi11g1148 808 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Mibi11g1148 808 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Mibi11g1148 808 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Mibi11g1148 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 148 IPR035892 -
Mibi11g1148 808 CDD PLDc_pPLDalpha_2 491 700 - -
Mibi11g1148 808 CDD C2_plant_PLD 2 147 - -
Mibi11g1148 808 FunFam Phospholipase D 466 699 - -
Mibi11g1148 808 SUPERFAMILY Phospholipase D/nuclease 444 738 - -
Mibi11g1148 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Mibi11g1148 808 SMART pld_4 653 680 IPR001736 GO:0003824
Mibi11g1148 808 SMART pld_4 325 363 IPR001736 GO:0003824
Mibi11g1148 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Mibi11g1148 808 SMART C2_3c 9 123 IPR000008 -
Mibi11g1148 808 Gene3D Endonuclease Chain A 476 700 - -
Mibi11g1148 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Mibi11g1148 808 PANTHER PHOSPHOLIPASE D 4 796 IPR015679 -
Mibi11g1148 808 Gene3D C2 domain 6 157 IPR035892 -
Mibi11g1148 808 SUPERFAMILY Phospholipase D/nuclease 150 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1148 Mibi-ChrMibi11 28663815 28667092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1148 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 81.874 0.0 1413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi11g1148 11 28663815 28667092 Mibi04g0804 04 16529304 16533591 CCT
Mibi04g0804 04 16529304 16533591 Mibi11g1148 11 28663815 28667092 ECH
Mibi05g0723 05 6832748 6836519 Mibi11g1148 11 28663815 28667092 ECH
Mibi11g1148 11 28663815 28667092 Mibi11g1148 11 28663815 28667092 ECH