Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1080 ATGGACCTTCTTCAAAGATCAGATCCATGTTCTTCTGAAAATTTGAGCATCATCTCATTTTCAGATGCTCCAGCATGCCCAAACCCCTCAATAATGGATTGCCAAACTATTGAGAAGAGAGACACACAAAAAGAAGACCAAACACAACCACACCCACATGTTCATCCTCCTCCTCCTTCTCTACTGAATATAAACCTTTCTAATGAGAATTCATCAGATGGATCAAAGCCAGAACTCAACCTCATCAATTGTTTTGATGCCAAGTCATCCTTAAACTCCTCAGAATTATCTTCTCATGACTTGGAACCCCGGATTTTCTCATGCAACTATTGCCAGAGAAAGTTTTACAGCTCACAGGCCCTTGGAGGACACCAGAATGCACACAAGCGTGAGAGGACTTTGGCGAAAAGAGGACACAAAGTTGGAGCTTCAGTTTCAGTGGGATTTGGACAGAGGTATACTAGCATGGCTTCTCTGCCCTTGCATGGCTCATATAACAGATCACTTGGGATTCAAGCACATTCTATGATCCACAAGCCCTCTTATCAAGCTCCCGGTACTCTTGGTTTACCGCATTTCCATGGTCAAAATTCCTGGTGGAGGAAGCCTTTAGATTCACAACCTGCAATTGGGAAGCTTCCTTCTGTAGGAAAAGTATATATTGGATCAGATGAAACTGAAGCAGCTTCCTTTTCCGGTGGAGTTTCACGGTCAGCCAAGTTTTCTCCGAATATGGTGGTGAAAGAAGGAATTGGAGCTTACTGGTTGGGAAGTGTTGTTCATGTTACTCATGTAAAATCTAAACAAGAAGAGTTGCAGAAGCTTGACTTGTCCCTAAAACTCTAA 846 0.4279 MDLLQRSDPCSSENLSIISFSDAPACPNPSIMDCQTIEKRDTQKEDQTQPHPHVHPPPPSLLNINLSNENSSDGSKPELNLINCFDAKSSLNSSELSSHDLEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKVGASVSVGFGQRYTSMASLPLHGSYNRSLGIQAHSMIHKPSYQAPGTLGLPHFHGQNSWWRKPLDSQPAIGKLPSVGKVYIGSDETEAASFSGGVSRSAKFSPNMVVKEGIGAYWLGSVVHVTHVKSKQEELQKLDLSLKL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1080 281 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
Mibi11g1080 281 MobiDBLite consensus disorder prediction 40 75 - -
Mibi11g1080 281 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 281 IPR044246 GO:0009788
Mibi11g1080 281 FunFam Zinc finger protein 2 85 151 - -
Mibi11g1080 281 MobiDBLite consensus disorder prediction 61 75 - -
Mibi11g1080 281 Gene3D Classic Zinc Finger 84 147 - -
Mibi11g1080 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Mibi11g1080 281 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1080 Mibi-ChrMibi11 27776675 27777520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1080 75 281 C2H2 Transcription Factor Family AT5G25160 46.429 9.08e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi11g1080 None None None