Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g1005 ATGGAGCCTTCGATTTCTCGTAGCGCTAATTCCTCCACCAATGGCCTCCTCTCCATCGTCAACATTCCTAGCCCCAGCGATTCCGAAACCCTACCTCCTCATCTACATCATCATCATCATCATCATCATCGGATCAATGGCGGTGGCGACGACGACGAAGACATTATAGATCCTGATGATCCTTTCGATGTCACTCACACCAAGAATGCTCCTGTTGAAACACTCCAGCGATGGAGAGAGGCGACTCTAGTTCTCAATCCTTCTCGGCGTTTTAGGTATACTCTGGACTTGAAAAAGGGAGAGGAGGAAGAGCAGAAGAAAGGATTGATAAGAGCCCATGCCCAAGTCGTACGAGCAGCGCTACTTTTCAGATTAGCTGGTGAACGTGATCTAGCGGTGGGCCCAGGAGTGTCAGCCCCAACCTCAGGCGACTTCGGAGTTGGGCTCGAACAACTTGTTTCAATGTCCAAGGATCAGAACATTTCTGCTTTGCAAAAATGTGGAGGGGTTAAAGGCTTATCAAATTTACTAAAATCAGATGCTGAGAAAGGAATTAATGGAGATGACGATGATATATTAAAAAGGAAAGTGACATTTGGGACGAATACATACCCTAAGAAAAAGGGGCGGACTTTCTGGATGTTTTTATGGGATGCTTGGCAAGATCTGACCCTTATCATATTGATTATAGCAGCTGCGGTGTCATTGGTACTTGGAATCAAAACAGAGGGCTTGGAAGAAGGTTGGTATGATGGAGGAAGCATTGCCTTTGCTGTTTTTCTTGTCATTCTGGTAACAGCTACCAGTGATTATCGCCAATCTCTGCAGTTTCAGAATTTGAATTCTGAAAAACAAAATATACAATTGGAGGTCATTAGAGGCAGTAGAGCAACAAAGATATCAATATATGATGTTGTTGTTGGTGATATTGTACCTCTCAAAATAGGAGACCAGGTCCCTGCTGATGGAGTTATAATCACTGCCCACTCACTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTATTCACAAAGACCACAAATCACCTTTTTTGATGTCTGGCTGCAAAGTAGCAGATGGCGTTGGTGTTATGCTGGTAACTGGGGTTGGTATCAATACGGAGTGGGGATTGTTGATGGCAAGCATCTCTGAAGATACTGGAGAAGAGACTCCATTGCAGGTACGTTTGAATGGAGTTGCAACTTTTATAGGCATGATAGGTCTTACAGTAGCTGTTGTTGTGCTAGCTGTCCTATTGGCCAGATACTTTTCTGGCCACACGAAAGATGTAACTGGAAATGTTGAATTTGTTGCTGGCCAGACTAGTATCAGTAGTGCAATAGATGGGGTTGTCAAAATTTTTACTATTGCAGTCACAATTGTCGTTGTTGCAGTTCCTGAAGGTCTTCCTCTGGCTGTTACCTTAACCCTGGCATACTCAATGCGGAAAATGATGGCAGACAAGGCCTTGGTGCGAAGGCTTTCTGCCTGTGAAACTATGGGCTGTGCAACAACAATTTGCAGTGATAAAACAGGAACGTTAACCTTGAACCAGATGACTGTGGTTGAGGCATGCATTGGGAGGAAGAAACTGAATTCACCCGATGACTCCTCAAAGTTGAATTCAGAAGTCTTATCTCTGATAAAAGAGGGCATCGCACATAATACAACCGGAACTGTTTTTGTGCCTAAGGATGGTGGAGAAACTGAGGTTTCAGGTTCTCCTACAGAAAAGGCAATCCTTTCTTGGGCAGTCAAGTTAGGAATGGATTTTGATCTTATCAGATCAAATACAATAGTTCTCCACGTATTTCCCTTCAATTCTGAGAAAAAGCGAGGTGGTGTCTTGCTGAAGCAGAATTTGGACTCCACAGTACATATACATTGGAAAGGCGCTGCAGAGATAGTACTTGGAAAATGCACTCAATATCTTGATTCAAATGGTAGCCTGCTTTCTATTGAAGGAGAGAAGGACTTTTTCAAGGCAGCTATTGAAGACATGGCTGCTCGCAGTTTGCGGTGTGTTGCCATTGCTTACAGGCCATATGATTTTGACAAAGTTCCCTATAAGGAGGAGGATTTGGACCAGTGGTCCTTACCTGAGGATGAGCTTGTCTTGCTTGCCATAGTTGGTATAAAGATTGCTGCCTTTAAGAATAACCCAGTTTTATTCTTCATCAAAGCTAACAATGATCTGTTTGATCAGGATCCCTGTCGTCCTGGTGTCAAAGATGCAGTGACAGTATGCACTGCAGCTGGTGTAAAGGTGCGCATGGTTACGGGAGACAATCTTCAAACGGCAAAGGCAATAGCTTTGGAGTGTGGTATACTGGCTTCACATTTAGATGCTGTTGAACCAGTTATCATTGAAGGAAAGACATTCCGGGCATTATCTGAAAAAGAAAGGGAAGAAGTTGCTAAAAAAATAACAGTGATGGGGAGGTCTTCTCCAAATGACAAGCTTTTACTTGTTCAAGCACTGCGTAAAGGGGGTGAAGTTGTTGCTGTTACTGGAGATGGCACCAATGATGCTCCCGCACTTCATGAGGCAGATATTGGCCTTTCTATGGGCATATCGGGAACTGAAGTCGCAAAAGAAAGTTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTTGTAAAGGTCGTACGCTGGGGACGTTCTGTATCTGCAAATATTCAGAAATTTATACAGTTCCAGCTCACAGTTAATGTAGCAGCTCTTGCGATAAATGTTGTGGCAGCTGTTTCTTCAGGCGATGTTCCTTTAAATGCAGTGCAGCTTTTGTGGCTTAACCTTATTATGGACACACTTGGGGCCCTGGCATTGGCTACAGAACCGCCTACTGACCACCTTATGCACAGACCACCAGTTGGTCGAAGGGAACCTCTCATAACGAATAACATGTGGAGGAACTTGCTTGTACAGGCTGTATATCAAATAGCGGTCCTCCTCGTTCTTAATTTTGGCGGAGAAAGTATTCTCCATGGTAGACCTGAAGCCGAAAAATTGAAACTGAAGAATACTTTAATTTTCAATGCATTTGTCCTCTGTCAAGTTTTCAATGAGTTCAATGCTCGAAAACCAGATCAATTGAACGTATTCACTGGAGTGACCAAGAACCGTCTTTTTGTGGGAATTGTGGGAATGACCGTTCTACTTCAGGTAATCATTATCCAGTTCCTTGGAAAGTTCACTAGCACGGTGAAGCTTAATTGGAAGATGTGGCTCGTTTCTGTTATGATCGGTCTCGTCAGTTGGCCTCTTGCTGTGCTTGGAAAGTTCATACCAGTTCCAAGAACACCATTGTCTCGCACCCTTAAGAGGAAACTTGTGCGATTTAAGAGATCAAGAACCCTTGCTACCCAACAATAG 3387 0.4352 MEPSISRSANSSTNGLLSIVNIPSPSDSETLPPHLHHHHHHHHRINGGGDDDEDIIDPDDPFDVTHTKNAPVETLQRWREATLVLNPSRRFRYTLDLKKGEEEEQKKGLIRAHAQVVRAALLFRLAGERDLAVGPGVSAPTSGDFGVGLEQLVSMSKDQNISALQKCGGVKGLSNLLKSDAEKGINGDDDDILKRKVTFGTNTYPKKKGRTFWMFLWDAWQDLTLIILIIAAAVSLVLGIKTEGLEEGWYDGGSIAFAVFLVILVTATSDYRQSLQFQNLNSEKQNIQLEVIRGSRATKISIYDVVVGDIVPLKIGDQVPADGVIITAHSLAIDESSMTGESKIIHKDHKSPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGMIGLTVAVVVLAVLLARYFSGHTKDVTGNVEFVAGQTSISSAIDGVVKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGCATTICSDKTGTLTLNQMTVVEACIGRKKLNSPDDSSKLNSEVLSLIKEGIAHNTTGTVFVPKDGGETEVSGSPTEKAILSWAVKLGMDFDLIRSNTIVLHVFPFNSEKKRGGVLLKQNLDSTVHIHWKGAAEIVLGKCTQYLDSNGSLLSIEGEKDFFKAAIEDMAARSLRCVAIAYRPYDFDKVPYKEEDLDQWSLPEDELVLLAIVGIKIAAFKNNPVLFFIKANNDLFDQDPCRPGVKDAVTVCTAAGVKVRMVTGDNLQTAKAIALECGILASHLDAVEPVIIEGKTFRALSEKEREEVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGISGTEVAKESSDIIILDDNFASVVKVVRWGRSVSANIQKFIQFQLTVNVAALAINVVAAVSSGDVPLNAVQLLWLNLIMDTLGALALATEPPTDHLMHRPPVGRREPLITNNMWRNLLVQAVYQIAVLLVLNFGGESILHGRPEAEKLKLKNTLIFNAFVLCQVFNEFNARKPDQLNVFTGVTKNRLFVGIVGMTVLLQVIIIQFLGKFTSTVKLNWKMWLVSVMIGLVSWPLAVLGKFIPVPRTPLSRTLKRKLVRFKRSRTLATQQ 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g1005 1128 FunFam Calcium-transporting ATPase 218 275 - -
Mibi11g1005 1128 Pfam E1-E2 ATPase 287 488 - -
Mibi11g1005 1128 Pfam Ca2+-ATPase N terminal autoinhibitory domain 59 101 IPR024750 GO:0005516
Mibi11g1005 1128 Gene3D - 741 885 IPR023214 -
Mibi11g1005 1128 Gene3D - 564 716 IPR023299 GO:0000166
Mibi11g1005 1128 SUPERFAMILY Calcium ATPase, transduction domain A 288 383 IPR008250 -
Mibi11g1005 1128 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 806 920 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi11g1005 1128 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 446 541 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi11g1005 1128 FunFam Calcium-transporting ATPase 9 plasma membrane-type 364 534 - -
Mibi11g1005 1128 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 517 715 IPR023299 GO:0000166
Mibi11g1005 1128 Pfam Cation transporter/ATPase, N-terminus 169 235 IPR004014 -
Mibi11g1005 1128 ProSitePatterns E1-E2 ATPases phosphorylation site. 512 518 IPR018303 -
Mibi11g1005 1128 Gene3D - 71 124 - -
Mibi11g1005 1128 SMART Cation_ATPase_N_a_2 169 240 IPR004014 -
Mibi11g1005 1128 CDD P-type_ATPase_Ca_PMCA-like 192 973 - -
Mibi11g1005 1128 Gene3D - 886 1094 - -
Mibi11g1005 1128 MobiDBLite consensus disorder prediction 1 68 - -
Mibi11g1005 1128 FunFam Calcium-transporting ATPase 738 885 - -
Mibi11g1005 1128 FunFam Calcium-transporting ATPase 857 1104 - -
Mibi11g1005 1128 FunFam Calcium-transporting ATPase 70 126 - -
Mibi11g1005 1128 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 157 716 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Mibi11g1005 1128 FunFam Calcium-transporting ATPase 520 717 - -
Mibi11g1005 1128 MobiDBLite consensus disorder prediction 1 28 - -
Mibi11g1005 1128 Gene3D - 173 364 - -
Mibi11g1005 1128 SFLD p-type atpase 492 892 IPR044492 -
Mibi11g1005 1128 SUPERFAMILY HAD-like 508 945 IPR036412 -
Mibi11g1005 1128 Pfam Cation transporting ATPase, C-terminus 925 1099 IPR006068 -
Mibi11g1005 1128 FunFam Calcium-transporting ATPase 267 386 - -
Mibi11g1005 1128 PANTHER CATION TRANSPORTING ATPASE 137 1102 - -
Mibi11g1005 1128 Gene3D - 365 530 - -
Mibi11g1005 1128 Pfam Cation transport ATPase (P-type) 566 645 - -
Mibi11g1005 1128 SUPERFAMILY Calcium ATPase, transmembrane domain M 168 1103 IPR023298 -
Mibi11g1005 1128 PRINTS P-type cation-transporting ATPase superfamily signature 510 524 - -
Mibi11g1005 1128 PRINTS P-type cation-transporting ATPase superfamily signature 334 348 - -
Mibi11g1005 1128 PRINTS P-type cation-transporting ATPase superfamily signature 840 859 - -
Mibi11g1005 1128 PRINTS P-type cation-transporting ATPase superfamily signature 755 765 - -
Mibi11g1005 1128 PRINTS P-type cation-transporting ATPase superfamily signature 864 876 - -
Mibi11g1005 1128 SFLD C1.7: P-type atpase like 492 892 - -
Mibi11g1005 1128 PRINTS Sodium/potassium-transporting ATPase signature 253 273 - -
Mibi11g1005 1128 PRINTS Sodium/potassium-transporting ATPase signature 630 648 - -
Mibi11g1005 1128 PRINTS Sodium/potassium-transporting ATPase signature 503 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g1005 Mibi-ChrMibi11 26283322 26302765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g1005 9 1122 Primary Pumps ATPases AT3G21180 71.326 0.0 1584