Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi11g1003 | ATGGATGGTATTCATGGGAGTGATTCTCAGATACACATGAGTGATGCACAACATCCGATGCATGTGCCGTATGTATCAGAAAATGAACAACATGGATTGGACCAAATGAGTGATGGGAATGGGATGGAAGACAATAACAATTGTGGTGATGCTAATGTTGGCGGACATGAGAGCATAGAAGGAGAAGTTTCCAACCCTGGAAATGCTACTGATGACCATGGTGCGATACTTGAACAAGCTAGTGGTGACCAGCTCACATTGTCTTTTCAAGGCCAGGTTTATGTGTTTGACTCTGTGTCACCGGAAAAGGTTCAAGCTGTGCTATTACTATTGGGAGGCCGTGAAGTACCTTCCATGTCTGCAAATCCAATGAATGTTCTCCAAAATAATCGGGATATGTCTGGAACTCCAGTAAAACTCAGTGTCCCTCAAAGATTAGCCTCATTGATTAGATTTCGAGAAAAGCGGAAAGAACGGAATTTTGAAAAGAAAATACGTTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACGTCTTCCAAGTCGAGCGCTGATGAATCTGTGCCAGCTGCAACAAATTTGGGGACAAATGAAAACTGGCCAGCAGACAATATTGGATCCCAACAGCAGGATGTTGTCTGTAGGCACTGTGGCATCAGCGAGAAATGCACGCCAATGATGCGGCGTGGACCTGAAGGGCCTAGAACCCTCTGCAACGCATGTGGACTCATGTGGGCAAATAAGGGAACTCTAAGGGACCTGACAAAAACTCCCTTGCCTGGACACAATTCTTCATTAAATAGAAATGAGGCCAGGCAGGTAGTTCTTAGATTGGCAAGAGACATTGGTGATTCATAA | 879 | 0.4391 | MDGIHGSDSQIHMSDAQHPMHVPYVSENEQHGLDQMSDGNGMEDNNNCGDANVGGHESIEGEVSNPGNATDDHGAILEQASGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSMSANPMNVLQNNRDMSGTPVKLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSSKSSADESVPAATNLGTNENWPADNIGSQQQDVVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKTPLPGHNSSLNRNEARQVVLRLARDIGDS | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi11g1003 | 292 | SMART | GATA_3 | 215 | 268 | IPR000679 | GO:0006355|GO:0043565 | |
| Mibi11g1003 | 292 | ProSiteProfiles | CCT domain profile. | 145 | 187 | IPR010402 | GO:0005515 | |
| Mibi11g1003 | 292 | Pfam | CCT motif | 145 | 187 | IPR010402 | GO:0005515 | |
| Mibi11g1003 | 292 | ProSitePatterns | GATA-type zinc finger domain. | 221 | 248 | IPR000679 | GO:0006355|GO:0043565 | |
| Mibi11g1003 | 292 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
| Mibi11g1003 | 292 | Pfam | tify domain | 81 | 112 | IPR010399 | - | |
| Mibi11g1003 | 292 | Pfam | GATA zinc finger | 221 | 257 | IPR000679 | GO:0006355|GO:0043565 | |
| Mibi11g1003 | 292 | Gene3D | - | 212 | 277 | IPR013088 | GO:0006355|GO:0008270 | |
| Mibi11g1003 | 292 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 18 | 269 | IPR045280 | GO:0006355 | |
| Mibi11g1003 | 292 | CDD | ZnF_GATA | 220 | 263 | IPR000679 | GO:0006355|GO:0043565 | |
| Mibi11g1003 | 292 | ProSiteProfiles | GATA-type zinc finger domain profile. | 215 | 263 | IPR000679 | GO:0006355|GO:0043565 | |
| Mibi11g1003 | 292 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 216 | 265 | - | - | |
| Mibi11g1003 | 292 | SMART | tify_2 | 78 | 113 | IPR010399 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi11g1003 | Mibi-ChrMibi11 | 26255272 | 26258976 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi11g1003 | 1 | 292 | Tify Gene Family | AT1G51600 | 56.863 | 2.72e-116 | 335 |
Transcription factors information