Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0971 ATGAGCTTCTTGCAAGGGATTATCGATTCATTCAGCTCCATCTTATCTTCCCCAAATTCTCCTTCTAATGATTCTCCTCCCAATTCCAATTCCAACCTTCCCTCATCTTCGAACATGCAATCCACGCCTTCTCCCCCAATTTCCAACGAACGTGTCGCTTACAAGCTCAAAGGGTACTTCGATTTAGCCAAAGAAGAGATTTCCAAGGCCGTTCGGGCCGAAGAGTGGGGCTTGATCGATGATGCTTTTCTTCATTATAATAACGCTCAACGGATTTTGATCGAAGCCAGTTCAACTGTTGTGCCTTCATTTATTACTTCCAGTGAACAAGAGAAGGTGAAATCATATCGTGAAAAAATATCAAAATGGCAGGGTCAAGTTTCTGAAAGGTTACAGATTCTAAGTAGACGGGCAGGCAGCAAGTCCAATATTCAGAAAACTGCAACTCAGGGACAAACTGCTGCAGTTCCATATAAGGCTTCAAATGCTAGAAAAGGTGTGTTGCAAAAAAATCATCAAAGAACAAACCATGTGGATAAAGATGCAAGCCCAAAATCTAGTCAGATATCAGGTGGAAATTATGATGCAAAATTAGTTGAAACAATTAATACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATATTGCGGGTCTTGAGAAGGCCAAGCAAGCATTAATGGAAATGGTTATTTTGCCAACGAAGAGAAGAGATCTCTTCACTGGTCTTCGAAGGCCGGCTAGAGGTTTGCTTCTCTTTGGTCCCCCGGGTAATGGAAAAACAATGCTCGCTAAAGCAGTAGCTTCAGAATCAGCAGGAACATTTTTTAATGTATCCGCAGCTGCCTTGACATCAAAATGGGTTGGTGAGGGTGAGAAGCTTGTCCGGACTCTTTTCATGGTAGCTATATCCAGGCAACCATCAGTGATTTTCATTGATGAGATTGACAGTATTATGTCAACAAGGTTGGCTAATGAGAATGACGCTAGCAGACGATTGAAATCTGAATTTCTCATCCAGTTTGATGGGGTGACGTCCAATCCTGATGACATTGTAATTGTTATTGGAGCTACCAATAAGCCGCAAGAATTGGATGATGCAGTTCTTCGGAGACTGGTGAAGAGAATTTATGTACCTTTGCCAGATGCAAATGTTCGGAGACTTTTACTAAAGCACAAACTCAAGGGTCAAGCATTCTCATTACCCAGTGGAGATCTAGAAAGGCTTGTACAAGATACAGAAGGATATTCCGGAAGTGATCTACAAGCCTTGTGTGAAGAAGCGGCAATGATGCCAATAAGAGAGTTGGGTTCTGACATCCTAACTGTTAAGCCAAATCAGGTAAGAGGACTGAGATATGAGGATTTTAAGAAGGCAATGACTGTAATTAGACCAAGTTTGAACAAAAGCAAGTGGGAAGAGCTTGAGCGGTGGAATGAGGAGTTTGGCTCTAACTGA 1464 0.4201 MSFLQGIIDSFSSILSSPNSPSNDSPPNSNSNLPSSSNMQSTPSPPISNERVAYKLKGYFDLAKEEISKAVRAEEWGLIDDAFLHYNNAQRILIEASSTVVPSFITSSEQEKVKSYREKISKWQGQVSERLQILSRRAGSKSNIQKTATQGQTAAVPYKASNARKGVLQKNHQRTNHVDKDASPKSSQISGGNYDAKLVETINTAIVDRSPSVRWEDIAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESAGTFFNVSAAALTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDANVRRLLLKHKLKGQAFSLPSGDLERLVQDTEGYSGSDLQALCEEAAMMPIRELGSDILTVKPNQVRGLRYEDFKKAMTVIRPSLNKSKWEELERWNEEFGSN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0971 487 Gene3D - 383 465 - -
Mibi11g0971 487 Gene3D - 211 481 IPR027417 -
Mibi11g0971 487 PANTHER AAA DOMAIN-CONTAINING 109 486 - -
Mibi11g0971 487 MobiDBLite consensus disorder prediction 15 48 - -
Mibi11g0971 487 Pfam AAA+ lid domain 407 438 IPR041569 -
Mibi11g0971 487 FunFam Spastin, putative 211 395 - -
Mibi11g0971 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 484 IPR027417 -
Mibi11g0971 487 SMART smart 56 133 IPR007330 -
Mibi11g0971 487 FunFam AAA-type ATPase family protein 383 465 - -
Mibi11g0971 487 Pfam ATPase family associated with various cellular activities (AAA) 252 382 IPR003959 GO:0005524|GO:0016887
Mibi11g0971 487 SMART AAA_5 248 384 IPR003593 -
Mibi11g0971 487 FunFam AAA-type ATPase family protein 49 138 - -
Mibi11g0971 487 CDD AAA 237 382 - -
Mibi11g0971 487 Gene3D - 49 138 - -
Mibi11g0971 487 ProSitePatterns AAA-protein family signature. 354 373 IPR003960 GO:0005524|GO:0016887
Mibi11g0971 487 CDD MIT_spastin 56 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0971 Mibi-ChrMibi11 25668302 25674415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0971 211 437 Calmodulin-binding Proteins AT3G56690 42.373 3.45e-46 171