Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0928 ATGGAGAAGAGAGAGTGCAAGCTCTGCTTCAAGACCTTCGCTAATGGCAGAGCTCTAGGAGGTCACATGAGGTCTCACATGAAGAAGCTCCAACTACCTCCAAAACCAGATGAAGATTCTCATCATTCACCTTCTCCTACCTTACTTAGTTTCGAAGCCAACTCGCCTTCTTCTTCTTCTTATGAAGATGAAGGAGACAACAACAATCTTCACATCATAGATCCTGAGCTTTCATTCGTTGTTGATCCTAATGCTTCCATAATTCAAGACAGAGAAAGCGAGACAGAGACCGAGTCATCATCGAAGAAACCGACTCGGAAACGATCCAAACGCGCTCGGAAACTCTGTAATTACGACGACAACGACGACGACGAAGGAAAATCGGAAAAGATCAAATCGAATGAACTCAAAACCGAGCCGTGGATCGCTGAACCGGAGCCGGCGAGTTCGATCTCCGATACGACGACCGAAGAAGACGTCGCGTACTGGCTTATGATGCTTTCTAGGGATAAATGGAAGAAACAGAGCGATCGGAAAGGCCGAAACGACGTCGTAGATGACGAAGATGAAGACAAAGACGAAGAAGAGGAACAAGAAGAAGACGATGGCGATGAATCCGAGGGAGAATTCGAGGCGATGAAATCGAGAAATCGCGGGAAATACACGTGCGAGACGTGTAAGAAGGTATTTAGATCTTATCAAGCACTTGGAGGTCATAGGGCGAGTCATAAGAAGATCAAATTGGAGGCTGAGAATAGAAATAATGGTGGAATCACTTCTTCTTCTTCGATGTTCGATAAGAAAATTCATGAATGTCCGGTTTGTTTTAGAGTTTTTTCTTCTGGTCAAGCTCTTGGGGGACACAAGAGGACTCATCTTAGTGGTTCGTCGCGGTCGGTGACATTATCACCTTCAATTCGAGCTTCTTCCATAGATCTTAATCTTCCTGCTACTATGGATGAAGATGAAATCAGTCAGATTGATAATTCTGGAGTTTCAGATGCAGAGTTCTTGGTTGTTGATCGCATCAGACAGTGA 1038 0.447 MEKRECKLCFKTFANGRALGGHMRSHMKKLQLPPKPDEDSHHSPSPTLLSFEANSPSSSSYEDEGDNNNLHIIDPELSFVVDPNASIIQDRESETETESSSKKPTRKRSKRARKLCNYDDNDDDEGKSEKIKSNELKTEPWIAEPEPASSISDTTTEEDVAYWLMMLSRDKWKKQSDRKGRNDVVDDEDEDKDEEEEQEEDDGDESEGEFEAMKSRNRGKYTCETCKKVFRSYQALGGHRASHKKIKLEAENRNNGGITSSSSMFDKKIHECPVCFRVFSSGQALGGHKRTHLSGSSRSVTLSPSIRASSIDLNLPATMDEDEISQIDNSGVSDAEFLVVDRIRQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0928 345 MobiDBLite consensus disorder prediction 89 103 - -
Mibi11g0928 345 Pfam C2H2-type zinc finger 5 29 - -
Mibi11g0928 345 Pfam C2H2-type zinc finger 221 245 - -
Mibi11g0928 345 Pfam C2H2-type zinc finger 270 293 - -
Mibi11g0928 345 Gene3D Classic Zinc Finger 218 292 - -
Mibi11g0928 345 MobiDBLite consensus disorder prediction 43 66 - -
Mibi11g0928 345 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 338 IPR044303 GO:0006355
Mibi11g0928 345 MobiDBLite consensus disorder prediction 21 70 - -
Mibi11g0928 345 MobiDBLite consensus disorder prediction 113 139 - -
Mibi11g0928 345 MobiDBLite consensus disorder prediction 174 214 - -
Mibi11g0928 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 297 IPR013087 -
Mibi11g0928 345 MobiDBLite consensus disorder prediction 187 208 - -
Mibi11g0928 345 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Mibi11g0928 345 ProSitePatterns Zinc finger C2H2 type domain signature. 223 243 IPR013087 -
Mibi11g0928 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 248 IPR013087 -
Mibi11g0928 345 SUPERFAMILY beta-beta-alpha zinc fingers 221 292 IPR036236 -
Mibi11g0928 345 MobiDBLite consensus disorder prediction 89 154 - -
Mibi11g0928 345 ProSitePatterns Zinc finger C2H2 type domain signature. 272 292 IPR013087 -
Mibi11g0928 345 SMART c2h2final6 4 26 IPR013087 -
Mibi11g0928 345 SMART c2h2final6 221 243 IPR013087 -
Mibi11g0928 345 SMART c2h2final6 270 292 IPR013087 -
Mibi11g0928 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0928 Mibi-ChrMibi11 24988801 24989838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0928 1 327 C2H2 Transcription Factor Family AT3G60580 42.899 5.51e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi11g0928 zf-C2H2_6 1.3e-10 CL0361