Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0926 ATGGCTCTCACTTTCCAACTTTTTCAACATGCATTATTCCCGTTCTACTTTGTTTTCCTCTCACTTTTCTTATCCATTTTCCTTGTCACTCCTTCCTCTTGCGTCATCCCTAGAAAGGTCCTCAATGCTTCTTCTTACTCTCCTTCTGGCTCAGACTGGTCTCCGGCCGAGGCCACTTGGTACGGTAGCCCCACCGGCGCCGGAAGTGACGGGGGTGCATGTGGATATGGTGGTGCAGTGGAGCAACCTCCATTTTCTTCAATGATATCAGCAGGAGGGCCTACCCTTTATGAATCAGGAAAAGGCTGTGGAGCTTGTTTTGAGGTGAAGTGCACTGAGAACTCAAACTCTGCATGCTCTGGTAACCCGGTGGAGGTAGTGATCACCGACGAGTGTCCCGGCTGTGGCTCGCCCGACAAAGTTCACTTCGATTTGAGTGGCACTGCCTTCGGTGCCATGGCTGTTTCCGGTCAGGGGCAAAAGCTACGTGATGCTGGCATTTTGCAGATTCAACACAGAAGGGTGAAATGCAACTATCGTGGCGCGTCATTAACGTTCCACGTGGACGCTGGCTCCAACGAAAACTACTTTGCATGTTTGATAGAGTACGAGGACGGAGACGGAGACCTAGCCAAGGTAGAACTGAAGGAAGCATCAGATTCTGCCACGTGGACTCCGATGCAACAATCTTGGGGCGCCGTCTGGAAGCTCAATGCCGGAGCGCCGCTCAAAGCACCGTTCTCCCTCCGCCTCACCACGGCGGAGTCCCGCACTCTGGTGGCCAATAATGTCATCCCCGCCGGTTGGAACCCTGGTCAAACTTTCCGATCATCACTTAATTTTCAAGCCTAA 852 0.5246 MALTFQLFQHALFPFYFVFLSLFLSIFLVTPSSCVIPRKVLNASSYSPSGSDWSPAEATWYGSPTGAGSDGGACGYGGAVEQPPFSSMISAGGPTLYESGKGCGACFEVKCTENSNSACSGNPVEVVITDECPGCGSPDKVHFDLSGTAFGAMAVSGQGQKLRDAGILQIQHRRVKCNYRGASLTFHVDAGSNENYFACLIEYEDGDGDLAKVELKEASDSATWTPMQQSWGAVWKLNAGAPLKAPFSLRLTTAESRTLVANNVIPAGWNPGQTFRSSLNFQA 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0926 283 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Mibi11g0926 283 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Mibi11g0926 283 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Mibi11g0926 283 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Mibi11g0926 283 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Mibi11g0926 283 PRINTS Expansin/Lol pI family signature 263 277 IPR007118 GO:0005576
Mibi11g0926 283 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 182 IPR007112 -
Mibi11g0926 283 SUPERFAMILY PHL pollen allergen 184 277 IPR036749 -
Mibi11g0926 283 Pfam Expansin C-terminal domain 185 266 IPR007117 -
Mibi11g0926 283 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 195 277 IPR007117 -
Mibi11g0926 283 Gene3D - 179 282 IPR036749 -
Mibi11g0926 283 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Mibi11g0926 283 PRINTS Major pollen allergen Lol pI signature 154 169 IPR005795 GO:0005576|GO:0019953
Mibi11g0926 283 PRINTS Major pollen allergen Lol pI signature 113 123 IPR005795 GO:0005576|GO:0019953
Mibi11g0926 283 PRINTS Major pollen allergen Lol pI signature 91 102 IPR005795 GO:0005576|GO:0019953
Mibi11g0926 283 PRINTS Major pollen allergen Lol pI signature 253 270 IPR005795 GO:0005576|GO:0019953
Mibi11g0926 283 PRINTS Major pollen allergen Lol pI signature 202 217 IPR005795 GO:0005576|GO:0019953
Mibi11g0926 283 PRINTS Major pollen allergen Lol pI signature 233 250 IPR005795 GO:0005576|GO:0019953
Mibi11g0926 283 Pfam Lytic transglycolase 90 164 IPR009009 -
Mibi11g0926 283 Gene3D - 37 178 IPR036908 -
Mibi11g0926 283 SMART dpbb_1 89 172 IPR007112 -
Mibi11g0926 283 SUPERFAMILY Barwin-like endoglucanases 44 181 IPR036908 -
Mibi11g0926 283 PANTHER EXPANSIN-B3 28 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0926 Mibi-ChrMibi11 24920576 24922498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0926 32 281 Expansin Gene Family AT1G65680 62.151 2.51e-113 326