Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0807 ATGTATAGAAAGAGACGTATACATCAATTGAAGCATCCATTTGATTCTCACCCATTTGAGGCTGTTCTCAATGGGTCGTGGCAAGCTTTGAGGTGTCTAACAATTGAAGGGGGAACAATGTTCTTACATTTCAAAGATGATAATTATGTGGTTAAGGAGAAAGCTCCTATATCAGACATTCGGATAAGGTCTAGGAAAGCAAATGTATCAGATTGCTCCTGCTTTTTAAGACCTGGAATTGACATATGTGTACTTTCTTCCTTTCAACATACTAATGGCTCAGATCAAAATAGCCCTAATCCTGTGTGGGGTGATGCTAAAATAAGTTCTATACAGAGAAAGCCACATGAACCTGGGTGCTTGTGTCAGTATTATGTGAACCTTTATGTTAATCAAGGTTGTATAGGTTCTGAGGTAAGAACTCTGAATAAGGAGATCATAGTAGTTGGGATAGATCAAATTTCTATTCTTCAGAGGCTTGAACATAGTTCTTGTGAAGATCAGCACTATCGGTGGGAGTCATCTGAGGACTGGCACGCAGTACCACAAACTAAACTGCTTACGGGGAAATTTTTATCGGATATTTCATGGTTAATTGTCTCATCAGTTTTAAAGAAGGTTTCATTTTGTGTGAGATCTGCAGAAAACAAGATTGTGTATCAAATAATGGGGGGTGATGATAATAGCTCCCTATTGGATGTTGTAAATTTCAGAATAGACAACAGCATGTTAGTACCCATTGTTTTCCAAGTTATTTCATGTGACACTGTTAAGGTTGAGGATACAGATGATTCCAATAAAGATAAATCATTTCCGTGTTATAGTCCTGAGGGTTTACGTCGTTCCAAACGTCGGAATGTACAGCCTGAGCGCTACCTTGGCTGTGATGAGACTCATGTGTTGGATGTTGGTTTTATTCGAACCAGGCCATACAAGATGGACACCCGAAAAGATGATACTGAGGACGATGAATTGTCAATGCCATTGTCATCTTTGATTGGTTTGCAAAAATGTTCTGGAGTGAAGGACGATGACAATGGACTAAGGTCTGATAAGATGAATTCCTACAAAAAGTTTAAAGTGTATAAAAGGAGGTCTAAATCTAAGGAGGTGAATTCATGTGATGCCAATGAGATTGAAAGTCAATCTCAACTTGCCATTGTTCCCGTTCCTCAAGAATGTGATCCTATTAACATTGAGCATTTTGATTCTAATGCCAAGGTCTCTAAACATTGCCCACAAAGAAATGTTGAATTTCCTACTAAATATCATCACATGATGGGTAGTCCTGAACCAAAGAGGAATGACATGGATTTGTTAACTTTTGAATCTTATAATCATCCTTCGAAGATTCCTGATCTTGAAGATTGTGCTGAGATTGCTTCCCGAAGTCGTTATAATCATGGCATTCCTAAATTGAAGGGGAAGAACTCAGTTGGTTTGGATGATATGGATTTTAAAGGCAAGTGGGAAGGGATAAATTCCAATAAAGTGGTTCAAGGGAGAAAATTTCATTCAACAATTTCAAGAGTCAAACAATCTGATGAAGAAAGAACTTATAAAGCTAGGTCCTTAAGTGCAGGGGCCTACAAGGAATTGATAGACTCATATTTAAAGAATATGAATGCAAAACCATCCAAAGCAGAGCCGCCTATTACTGAGCAGTGGATACAATTCAAGGAAACAAGTAACTTAGGACAAAAGAGGGAAACAAAGGAACCCCACATAGAGGATGAGGAAGAAACTGATGAACTGGATATATTGTGGAGAGAAATGGAAGTTTCATTGGCATCAAGTTATGTTGAAGGAGACACAGAGGGTTCAAGTGCTGCAGTTTATTCTGAGGCATGGGAAAAAACCGATTCACTTTGTTGCCATAATTATAGAATGAATGAAGAAATCGGAATTTACTGTGTCATATGTGGCATCATCAGTACAGAGATCAAAGATATTTCGCCACCATTTTTGGAACGTTCAACTTGGCACCATGAGGAGAAGCAACACAGTGGAGAAGGTTCAGAACCAGAGCCAAAGGCTGATGAAAATGATGGTTTTAATCTTTTCTTGACTGATGCTTTGCCTGATCAACCTATAACTGGAGACAATGATAATGTATGGGCATTAATTCCTGAACTAAGGTGGAAGTTGCACATCCACCAAAAAAAAGCTTTTGAATTTCTTTGGAAAAATATTGCTGGGTCTGTGGACCCAACACTTATGGAGGCAGCATCCAGAAAAAGAGGTGGTTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACATTCCTTATTATTGCATTTCTTGTTAGCTACTTGAAGTTATTCCCAGGAAAGCGGCCATTGGTTCTTGCTCCAAAGACAACGCTTTATACATGGTATAAAGAATTTATTAAATGGAAAATTCCAATTCCAGTGTATCTAATTCATGGTCGTAGAACCTACCGAGCGTTCAAGCAGAATAACATGGTTTTTCATGGTGGTCCAAAGCCTACTGATGATGTCAAGCATATTTTGGATTGCCTGGAAAAGATACAAAAGTGGCATGCACACCCGAGTGTTCTAGTCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTTCTCACAGAAAGTACATGGCTAAAGTATTAAGGGAAAGTCCTGGTATTCTTATACTGGATGAAGGGCACAATCCTAGAAGCACAAAATCAAGGTTGAGGAAAGTTTTGATGAAAGTACAGACAGAATTGAGAATATTACTTTCAGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAATACTCTTTGCTTGGCCAGACCAAAGTTTGCTTTTGAAGTTTTGAAAAAGCTGGACCCTAAATATAAGAGACAAATGAAAGGAGCAGGAAAAGCACGTCATTTAATAGAGTCACGAGCTAGAAAATTCTTCTTGGATAATATTGCCAAAAAAGTTGACTCAAGTGATAAAAAGGAGCAAATGCAGGGTCTGAACAAGTTGAGAAAGATGACCAGCAGTTTTATAGATGTTTATGAAAATGGGAATTCAGAGGATCTTCCTGGTTTACAAATCTATACATTGTTAATGAATACTACTGATATACAGCGTGAGATTTTGAATAAACTCCAAAAGAAAATGTATGCATGCAATGGATATCCTTTGGAGTTAGAGCTTTTGATAACCCTTGGATCAATACATCCTTGGTTAATCAAAACAGCCGTATGTGCTGAAAAGTTTTTCTCTATAGAGCAATTGATGGAGCTAGAGAAATGGAAGTATGATTTAAAAAAAGGGTCAAAAGTGAAATTCGTTTTGAGTCTGATCTATCGCGTTGTCAGGAATGAGAAGGTACTAATGTTTTGCCATAATATTGCACCTGTGAGGTTATTTGCAGAACTATTTGAGAAGTTCTTTGGATGGTATAGAGGTCGAGAAGTCTTAGTTCTTACTGGGGAGCTAGAGCTCTTTGAACGAGGGAGGATAATGGATCAGTTTGAGGATCCTAATGGAGCATCAAAGATACTTCTTGCTTCAATTTCATCTTGCGCTGAAGGCATTAGTTTGACAGCAGCCTCTCGGGTGATTTTGTTGGATTCAGAATGGAATCCATCCAAGACAAAACAGGCTGTTGCACGTGCTTTTCGTCCTGGTCAGCAGAAGATGGTTTATGTGTACCAGCTTCTGGCAACAGGAACATTGGAGGAAGATAAATATAAAAGAACCACTTGGAAAGAGTGGGTTTCCAGCATGATTTTTAGTGAAGAATTTGTGCAGGACCCTTCCCGATGGCGAGCAGAAACGATTGAGGATGACATACTGCGAGAAATGATTGAAGAAGACCGCTCCAATTCATTCCATAAGATTATGAAGAATGAAAAGACATCCACAAACTGA 3888 0.3845 MYRKRRIHQLKHPFDSHPFEAVLNGSWQALRCLTIEGGTMFLHFKDDNYVVKEKAPISDIRIRSRKANVSDCSCFLRPGIDICVLSSFQHTNGSDQNSPNPVWGDAKISSIQRKPHEPGCLCQYYVNLYVNQGCIGSEVRTLNKEIIVVGIDQISILQRLEHSSCEDQHYRWESSEDWHAVPQTKLLTGKFLSDISWLIVSSVLKKVSFCVRSAENKIVYQIMGGDDNSSLLDVVNFRIDNSMLVPIVFQVISCDTVKVEDTDDSNKDKSFPCYSPEGLRRSKRRNVQPERYLGCDETHVLDVGFIRTRPYKMDTRKDDTEDDELSMPLSSLIGLQKCSGVKDDDNGLRSDKMNSYKKFKVYKRRSKSKEVNSCDANEIESQSQLAIVPVPQECDPINIEHFDSNAKVSKHCPQRNVEFPTKYHHMMGSPEPKRNDMDLLTFESYNHPSKIPDLEDCAEIASRSRYNHGIPKLKGKNSVGLDDMDFKGKWEGINSNKVVQGRKFHSTISRVKQSDEERTYKARSLSAGAYKELIDSYLKNMNAKPSKAEPPITEQWIQFKETSNLGQKRETKEPHIEDEEETDELDILWREMEVSLASSYVEGDTEGSSAAVYSEAWEKTDSLCCHNYRMNEEIGIYCVICGIISTEIKDISPPFLERSTWHHEEKQHSGEGSEPEPKADENDGFNLFLTDALPDQPITGDNDNVWALIPELRWKLHIHQKKAFEFLWKNIAGSVDPTLMEAASRKRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRAFKQNNMVFHGGPKPTDDVKHILDCLEKIQKWHAHPSVLVMGYTSFLTLMREDSKFSHRKYMAKVLRESPGILILDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAFEVLKKLDPKYKRQMKGAGKARHLIESRARKFFLDNIAKKVDSSDKKEQMQGLNKLRKMTSSFIDVYENGNSEDLPGLQIYTLLMNTTDIQREILNKLQKKMYACNGYPLELELLITLGSIHPWLIKTAVCAEKFFSIEQLMELEKWKYDLKKGSKVKFVLSLIYRVVRNEKVLMFCHNIAPVRLFAELFEKFFGWYRGREVLVLTGELELFERGRIMDQFEDPNGASKILLASISSCAEGISLTAASRVILLDSEWNPSKTKQAVARAFRPGQQKMVYVYQLLATGTLEEDKYKRTTWKEWVSSMIFSEEFVQDPSRWRAETIEDDILREMIEEDRSNSFHKIMKNEKTSTN 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0807 1295 Pfam Helicase conserved C-terminal domain 1098 1214 IPR001650 -
Mibi11g0807 1295 Gene3D - 1018 1295 IPR027417 -
Mibi11g0807 1295 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 51 1294 IPR044567 GO:0080188
Mibi11g0807 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1016 1278 IPR027417 -
Mibi11g0807 1295 SMART helicmild6 1126 1215 IPR001650 -
Mibi11g0807 1295 CDD DEXHc_ATRX-like 716 955 - -
Mibi11g0807 1295 Pfam SNF2-related domain 722 1038 IPR000330 GO:0005524|GO:0140658
Mibi11g0807 1295 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1101 1262 IPR001650 -
Mibi11g0807 1295 SMART ultradead3 712 956 IPR014001 -
Mibi11g0807 1295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 685 942 IPR027417 -
Mibi11g0807 1295 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 741 940 IPR014001 -
Mibi11g0807 1295 Gene3D - 698 983 IPR038718 -
Mibi11g0807 1295 MobiDBLite consensus disorder prediction 661 681 - -
Mibi11g0807 1295 CDD SF2_C_SNF 1090 1226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0807 Mibi-ChrMibi11 20588748 20594450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0807 1141 1233 RAD5 or RAD16-like Gene Family AT5G05130 37.234 2.41e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi11g0807 SNF2_N 1.4e-16 CL0023