Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0776 ATGCCACCAAGAACGGTGAAGAGAGGGGCTGGAGCTGCTGCCAGAAGAGGTGGCAGAGGAGGCAGAGGGACGCCGAAATCTGCCCAGAATCAGCAGAATCTTGATTCCGTACAAGAGGTTGTGAAGCATGAAGAAAAGCAAGTCGTTGAGGAGAAGCCTGTCGTTGAGGAGAAATCTGTTGTTGAAGAGAAATCTGTCGTTGAGGAGAAGCAAGGAGTAGGTATTGACATGAATCAGATGGCTTTTGATATGAACCAAGTCGCTTCTGAGGCTGAAGAAGCAAATATTGTCACAAATGGGTCGGCTGCTGTGAAAAACGATGAAGAGGAGGTTAAGGAGTCAATAGATGAATATGAGAAAGATGAACGCTTAGATCTGGAGGATAATGATCCAGAGTATGAAACTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAGCACGATGATGTTCAGGAGGTAGGAGATGAGATGGAGGAAGAACATGATGAGAATTTGGGTGAAGAAGAGGGTGATATGGTTGAGGAGGAAGTGGAAGATGTTCATGAAGAACTTGAGGGTGAAGAGGATGATGAGCATCCTGGTGAGGAGCATGAGCATGTAGAGAATGCTGATGCTGAAGAAAATGAACACCATGAAGGTTTGAAAGAGAGGAGAAAGCGTAAGGAATTTGAAGTATTTGTTGGAGGCTTAGATAAAGATGCTACTGAGGATGATCTGAGGAAGGTTTTTAGTGCAGTTGGTGATGTTATTGAAGTGAGGCTTATGATGAATCCTCAGACTGAAAAGAATAAGGGTTTTGCATTCTTGCGATTTGCAACTGTTGAACAAGCTAAACGAGCTGTAATCGAGCTTAAAAATCCAGTGATTAATGGCAAACAATGTGGGGTAACCCCCAGTCAGGACAGTGACACCCTCTTTTTGGGTAACATATGCAAGACATGGACTAAGGAAGCTCTTAAAGAGAAGTTAAAGCATTATGGAGTTGACAATGTGGAGGATCTGACTTTAGTAGAAGATAGTAATAACGAAGGATTGAACCGTGGATTTGCATTTTTAGAATTTGCATCTCGGTCAGATGCTATGGATGCCTTTAAGAGATTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAGGCCTGCGAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAGATTATGGCACAGGTTAAAACTGTATTTATTGATGGTCTGCCTCCATCATGGGATGAAGATCGTGTACGGGGTCTTCTTAAGAGATTTGGAGAGATTGAGAAGATTGAGCTTGCCAGAAACATGCCTTCTGCTAAGAGGAAGGATTTCGGATTTGTTACATTTGATACCCACGATGCTGCTGTGACATGTGCCAAAAGCATTAATAATTCTGAGATAGGTGAAGGGGACAGTAAGGCAAAAGTTAGGGCAAGATTATCGAGACCACTTCAGAGAGGCCATGGAAAACATGGTGGTCGAGGGGACTTTCGGTCTAGTCGTGCTTCTGGGAGAGTCACAAGGCCTTCATGGAGTCGTCCAGCACCTCGTAGTTTACCTGCCCGAGGGGTGAGGGGTATTAGTAGTCGGGTTCCTCCAGTCAGGCCTGTTAGTGTTAGAGATAGACGTCCAGCCATGCCAATGACAGTAAGAGCTAGGCCAGTGGCTCCTCCAGCTAGATCCTATGATAGGAGACCAGCTGTTCCTGCATATCCTAAAAGTAGCATGAAGAGAGATTATGGTCGGCGTGAGGATTTGCCACCACCAAGAAGTAGAGTAGCTGCAGATTATGGTTCTCGGGTAGCCTCTGAGAGACGCCCATCTTACAGGGATTATCCTGCTCGTGGCCCTACCTACTCTGACCTTCCTAGAAGTTCTTCATCTCGTGTGGCACCTAGGAGAGGTTATGTGGATGATGGTTATGGTCAAAGATTTGAGAGGCCCCCTCCCCCTCCACCCCCACATCCAAGTTATCGGGAAGGACGCCCTCGTGACTATGATACGCTCTCTGGCTCAAAACGCCAATATGCTGCCATAGATGATGTTCCACCACGATATGCAGATGGTGGTGCTCGCCAATCTAGAGCTCGATTGGACTATGACTATGGTGGTAGTACTTCACAGTATGGAGATGCTTATGGGGATAGACTTGGAAGATCTAGCATGGGCTATAGTGGTGGCAGGAGTTCTATGTCAAGTCAAGACTCACATGGGATGTATAGCAGTCGTCAGGGCATGAATTATAGTGGAGGTTCTTTTGGCAACAGTGATGTTGGTGGTATGTACTCCTCCAGTTATGGTGGTGATTACATGTCTCGTGGAAATGATGTTGGTGGCGGCTCATACTCATCACTATATCCTGGCAGAGGTGTGGGGGGTAGTGGCAGTTACATGGGCGGTAGTGGGTCTGGGTCTTATTATTAA 2430 0.4593 MPPRTVKRGAGAAARRGGRGGRGTPKSAQNQQNLDSVQEVVKHEEKQVVEEKPVVEEKSVVEEKSVVEEKQGVGIDMNQMAFDMNQVASEAEEANIVTNGSAAVKNDEEEVKESIDEYEKDERLDLEDNDPEYETEEYGGVDYDEKEIEHDDVQEVGDEMEEEHDENLGEEEGDMVEEEVEDVHEELEGEEDDEHPGEEHEHVENADAEENEHHEGLKERRKRKEFEVFVGGLDKDATEDDLRKVFSAVGDVIEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVIELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGLNRGFAFLEFASRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRGLLKRFGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNSEIGEGDSKAKVRARLSRPLQRGHGKHGGRGDFRSSRASGRVTRPSWSRPAPRSLPARGVRGISSRVPPVRPVSVRDRRPAMPMTVRARPVAPPARSYDRRPAVPAYPKSSMKRDYGRREDLPPPRSRVAADYGSRVASERRPSYRDYPARGPTYSDLPRSSSSRVAPRRGYVDDGYGQRFERPPPPPPPHPSYREGRPRDYDTLSGSKRQYAAIDDVPPRYADGGARQSRARLDYDYGGSTSQYGDAYGDRLGRSSMGYSGGRSSMSSQDSHGMYSSRQGMNYSGGSFGNSDVGGMYSSSYGGDYMSRGNDVGGGSYSSLYPGRGVGGSGSYMGGSGSGSYY 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0776 809 MobiDBLite consensus disorder prediction 120 195 - -
Mibi11g0776 809 Gene3D - 307 389 IPR012677 -
Mibi11g0776 809 Coils Coil 143 163 - -
Mibi11g0776 809 MobiDBLite consensus disorder prediction 105 119 - -
Mibi11g0776 809 MobiDBLite consensus disorder prediction 1 35 - -
Mibi11g0776 809 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 390 IPR000504 GO:0003723
Mibi11g0776 809 Gene3D - 150 306 IPR012677 -
Mibi11g0776 809 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 403 485 IPR000504 GO:0003723
Mibi11g0776 809 MobiDBLite consensus disorder prediction 196 220 - -
Mibi11g0776 809 SUPERFAMILY RNA-binding domain, RBD 222 304 IPR035979 GO:0003676
Mibi11g0776 809 FunFam RNA recognition water-stress protein1 393 514 - -
Mibi11g0776 809 Coils Coil 173 193 - -
Mibi11g0776 809 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 24 809 - -
Mibi11g0776 809 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 304 IPR000504 GO:0003723
Mibi11g0776 809 SUPERFAMILY RNA-binding domain, RBD 304 470 IPR035979 GO:0003676
Mibi11g0776 809 MobiDBLite consensus disorder prediction 482 671 - -
Mibi11g0776 809 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 160 306 - -
Mibi11g0776 809 CDD RRM_SF 405 470 - -
Mibi11g0776 809 CDD RRM_SF 308 375 - -
Mibi11g0776 809 FunFam Heterogeneous nuclear ribonucleoprotein Q 307 389 - -
Mibi11g0776 809 Gene3D - 395 511 IPR012677 -
Mibi11g0776 809 MobiDBLite consensus disorder prediction 578 592 - -
Mibi11g0776 809 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 374 IPR000504 GO:0003723
Mibi11g0776 809 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 296 IPR000504 GO:0003723
Mibi11g0776 809 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 405 470 IPR000504 GO:0003723
Mibi11g0776 809 Coils Coil 101 124 - -
Mibi11g0776 809 SMART rrm1_1 227 300 IPR000504 GO:0003723
Mibi11g0776 809 SMART rrm1_1 404 479 IPR000504 GO:0003723
Mibi11g0776 809 SMART rrm1_1 307 386 IPR000504 GO:0003723
Mibi11g0776 809 CDD RRM_SF 228 299 - -
Mibi11g0776 809 MobiDBLite consensus disorder prediction 98 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0776 Mibi-ChrMibi11 19357563 19362603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0776 221 484 Eukaryotic Initiation Factors Gene Family AT1G49760 24.080 2.77e-14 74.7