Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mibi11g0671 | ATGGATGTAATCCCTTTGAGCCTTATCGAGAACGTGGAGCTTCATGAAGACTTCAATTATGGATTCCCATCAGCTGCTGCAAAGATCTTGGTTTACGAAACTGGTTCTGTGTCTAGGGTTTCCCTCGCACCGGATTTCAATTCAAACGGCCGCTGTTGCCGACGTCACTCCGTCACACACGGCGCCATGAAGCTCACTGTCAAGACTTTGAAAGGAAGCCATTTCGAAATTAAAGCTCAATCTTCAGACACTGTCATGGCTGTCAAGAAGAATATAGAAGATATACAAGGAAAAGATAACTACCCATGTGGACAGCAATTGCTTATTTTTCATGGCAAGGTTTTGAAAGATGAAACTACACTAGGAGAGAATCAAGTCTCTGAAGATGGATTTCTTGTTGTTATGCTTAGCAAGAGTAAAACTTCAAGTTCAACTGGGACTTCATCCACTCAGCCTGCTAACAATCCATCTACACCTGTAACAACCACAAATTCCACTACTCCTGCACCTGAAGCACCGGATCAAAGTATTCATGTGCCTGTGGATACTTATGGTCAGGCTGCTTCAAATTTAGCTGTCGGTGGTGAGCTTGAGCAGACTATTCAACAAATCATGGACATGGGAGGTGGCAACTGGGACAGAGAGACAGTTATACGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTGTGGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAGGTTGCTATACCAGTGTCTCATTACCCAGCCGGTCAGACAACTGGGACAGGTGGGGCCACCGTTGGAGGTGTTTCCGGGGCACCTAATACATCACCGTTAAACATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGACTTGGATCTCTGGAATTCCTTAGAAACAACCCCCAGTTTCAAGCTTTGAGATCAATGGTGCATTCTAATCCTCAAATCCTGCAGCCTGTACTTCAAGAGCTTGGGAAGCAGAATCCTCAACTGTTAAGACTAATTCAGGAGCATCATGCTGAATTTCTCCAGTTAGTTAATGAACCCATGGAAGGTTCTGAAGGTGACATATTTGACCAGCCTGAGCAAGACATGCCTCATTCCATCAATGTGACGCCAGCAGAACAAGAGGCAATTGGAAGGCTTGAAGCAATGGGATTTGATAGAGCCTCAGCCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTGCTGGAGAACGCTGGAGATTTTGAGGATTGA | 1263 | 0.4553 | MDVIPLSLIENVELHEDFNYGFPSAAAKILVYETGSVSRVSLAPDFNSNGRCCRRHSVTHGAMKLTVKTLKGSHFEIKAQSSDTVMAVKKNIEDIQGKDNYPCGQQLLIFHGKVLKDETTLGENQVSEDGFLVVMLSKSKTSSSTGTSSTQPANNPSTPVTTTNSTTPAPEAPDQSIHVPVDTYGQAASNLAVGGELEQTIQQIMDMGGGNWDRETVIRALRAAYNNPERAVDYLYSGIPEAAEVAIPVSHYPAGQTTGTGGATVGGVSGAPNTSPLNMFPQETISGAGAGLGSLEFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPQLLRLIQEHHAEFLQLVNEPMEGSEGDIFDQPEQDMPHSINVTPAEQEAIGRLEAMGFDRASAIEAFLACDRDEQLAANYLLENAGDFED | 420 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mibi11g0671 | 420 | PRINTS | DNA repair protein Rad23 signature | 370 | 386 | IPR004806 | GO:0006289 | |
Mibi11g0671 | 420 | PRINTS | DNA repair protein Rad23 signature | 321 | 343 | IPR004806 | GO:0006289 | |
Mibi11g0671 | 420 | PRINTS | DNA repair protein Rad23 signature | 387 | 401 | IPR004806 | GO:0006289 | |
Mibi11g0671 | 420 | PRINTS | DNA repair protein Rad23 signature | 402 | 417 | IPR004806 | GO:0006289 | |
Mibi11g0671 | 420 | PANTHER | UV EXCISION REPAIR PROTEIN RAD23 | 63 | 409 | - | - | |
Mibi11g0671 | 420 | MobiDBLite | consensus disorder prediction | 141 | 177 | - | - | |
Mibi11g0671 | 420 | TIGRFAM | rad23: UV excision repair protein Rad23 | 63 | 419 | IPR004806 | GO:0006289 | |
Mibi11g0671 | 420 | MobiDBLite | consensus disorder prediction | 141 | 172 | - | - | |
Mibi11g0671 | 420 | Gene3D | - | 60 | 142 | - | - | |
Mibi11g0671 | 420 | Gene3D | - | 285 | 351 | IPR036353 | GO:0003684|GO:0006289|GO:0043161 | |
Mibi11g0671 | 420 | SUPERFAMILY | UBA-like | 179 | 241 | IPR009060 | GO:0005515 | |
Mibi11g0671 | 420 | Gene3D | - | 190 | 240 | - | - | |
Mibi11g0671 | 420 | SUPERFAMILY | UBA-like | 354 | 418 | IPR009060 | GO:0005515 | |
Mibi11g0671 | 420 | Gene3D | - | 367 | 415 | - | - | |
Mibi11g0671 | 420 | FunFam | UV excision repair protein RAD23 | 63 | 142 | - | - | |
Mibi11g0671 | 420 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 374 | 414 | IPR015940 | - | |
Mibi11g0671 | 420 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 195 | 238 | IPR015940 | - | |
Mibi11g0671 | 420 | Pfam | Ubiquitin family | 65 | 138 | IPR000626 | GO:0005515 | |
Mibi11g0671 | 420 | FunFam | UV excision repair protein RAD23 homolog | 367 | 415 | - | - | |
Mibi11g0671 | 420 | SMART | uba_6 | 197 | 237 | IPR015940 | - | |
Mibi11g0671 | 420 | SMART | uba_6 | 376 | 413 | IPR015940 | - | |
Mibi11g0671 | 420 | FunFam | UV excision repair protein RAD23 homolog | 190 | 240 | - | - | |
Mibi11g0671 | 420 | SMART | ubq_7 | 63 | 137 | IPR000626 | GO:0005515 | |
Mibi11g0671 | 420 | SMART | CBM | 293 | 336 | IPR006636 | - | |
Mibi11g0671 | 420 | CDD | Ubl_Rad23 | 63 | 136 | - | - | |
Mibi11g0671 | 420 | FunFam | UV excision repair protein RAD23 B | 285 | 351 | - | - | |
Mibi11g0671 | 420 | Pfam | XPC-binding domain | 295 | 350 | IPR015360 | GO:0003684|GO:0006289|GO:0043161 | |
Mibi11g0671 | 420 | SUPERFAMILY | Ubiquitin-like | 63 | 146 | IPR029071 | - | |
Mibi11g0671 | 420 | Pfam | UBA/TS-N domain | 376 | 411 | IPR015940 | - | |
Mibi11g0671 | 420 | Pfam | UBA/TS-N domain | 197 | 235 | IPR015940 | - | |
Mibi11g0671 | 420 | ProSiteProfiles | Ubiquitin domain profile. | 63 | 141 | IPR000626 | GO:0005515 | |
Mibi11g0671 | 420 | SUPERFAMILY | XPC-binding domain | 292 | 358 | IPR036353 | GO:0003684|GO:0006289|GO:0043161 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mibi11g0671 | Mibi-ChrMibi11 | 15926701 | 15934648 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mibi11g0671 | 63 | 136 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 39.189 | 2.02e-08 | 50.8 |