Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0671 ATGGATGTAATCCCTTTGAGCCTTATCGAGAACGTGGAGCTTCATGAAGACTTCAATTATGGATTCCCATCAGCTGCTGCAAAGATCTTGGTTTACGAAACTGGTTCTGTGTCTAGGGTTTCCCTCGCACCGGATTTCAATTCAAACGGCCGCTGTTGCCGACGTCACTCCGTCACACACGGCGCCATGAAGCTCACTGTCAAGACTTTGAAAGGAAGCCATTTCGAAATTAAAGCTCAATCTTCAGACACTGTCATGGCTGTCAAGAAGAATATAGAAGATATACAAGGAAAAGATAACTACCCATGTGGACAGCAATTGCTTATTTTTCATGGCAAGGTTTTGAAAGATGAAACTACACTAGGAGAGAATCAAGTCTCTGAAGATGGATTTCTTGTTGTTATGCTTAGCAAGAGTAAAACTTCAAGTTCAACTGGGACTTCATCCACTCAGCCTGCTAACAATCCATCTACACCTGTAACAACCACAAATTCCACTACTCCTGCACCTGAAGCACCGGATCAAAGTATTCATGTGCCTGTGGATACTTATGGTCAGGCTGCTTCAAATTTAGCTGTCGGTGGTGAGCTTGAGCAGACTATTCAACAAATCATGGACATGGGAGGTGGCAACTGGGACAGAGAGACAGTTATACGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTGTGGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAGGTTGCTATACCAGTGTCTCATTACCCAGCCGGTCAGACAACTGGGACAGGTGGGGCCACCGTTGGAGGTGTTTCCGGGGCACCTAATACATCACCGTTAAACATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGACTTGGATCTCTGGAATTCCTTAGAAACAACCCCCAGTTTCAAGCTTTGAGATCAATGGTGCATTCTAATCCTCAAATCCTGCAGCCTGTACTTCAAGAGCTTGGGAAGCAGAATCCTCAACTGTTAAGACTAATTCAGGAGCATCATGCTGAATTTCTCCAGTTAGTTAATGAACCCATGGAAGGTTCTGAAGGTGACATATTTGACCAGCCTGAGCAAGACATGCCTCATTCCATCAATGTGACGCCAGCAGAACAAGAGGCAATTGGAAGGCTTGAAGCAATGGGATTTGATAGAGCCTCAGCCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTGCTGGAGAACGCTGGAGATTTTGAGGATTGA 1263 0.4553 MDVIPLSLIENVELHEDFNYGFPSAAAKILVYETGSVSRVSLAPDFNSNGRCCRRHSVTHGAMKLTVKTLKGSHFEIKAQSSDTVMAVKKNIEDIQGKDNYPCGQQLLIFHGKVLKDETTLGENQVSEDGFLVVMLSKSKTSSSTGTSSTQPANNPSTPVTTTNSTTPAPEAPDQSIHVPVDTYGQAASNLAVGGELEQTIQQIMDMGGGNWDRETVIRALRAAYNNPERAVDYLYSGIPEAAEVAIPVSHYPAGQTTGTGGATVGGVSGAPNTSPLNMFPQETISGAGAGLGSLEFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPQLLRLIQEHHAEFLQLVNEPMEGSEGDIFDQPEQDMPHSINVTPAEQEAIGRLEAMGFDRASAIEAFLACDRDEQLAANYLLENAGDFED 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0671 420 PRINTS DNA repair protein Rad23 signature 370 386 IPR004806 GO:0006289
Mibi11g0671 420 PRINTS DNA repair protein Rad23 signature 321 343 IPR004806 GO:0006289
Mibi11g0671 420 PRINTS DNA repair protein Rad23 signature 387 401 IPR004806 GO:0006289
Mibi11g0671 420 PRINTS DNA repair protein Rad23 signature 402 417 IPR004806 GO:0006289
Mibi11g0671 420 PANTHER UV EXCISION REPAIR PROTEIN RAD23 63 409 - -
Mibi11g0671 420 MobiDBLite consensus disorder prediction 141 177 - -
Mibi11g0671 420 TIGRFAM rad23: UV excision repair protein Rad23 63 419 IPR004806 GO:0006289
Mibi11g0671 420 MobiDBLite consensus disorder prediction 141 172 - -
Mibi11g0671 420 Gene3D - 60 142 - -
Mibi11g0671 420 Gene3D - 285 351 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mibi11g0671 420 SUPERFAMILY UBA-like 179 241 IPR009060 GO:0005515
Mibi11g0671 420 Gene3D - 190 240 - -
Mibi11g0671 420 SUPERFAMILY UBA-like 354 418 IPR009060 GO:0005515
Mibi11g0671 420 Gene3D - 367 415 - -
Mibi11g0671 420 FunFam UV excision repair protein RAD23 63 142 - -
Mibi11g0671 420 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 374 414 IPR015940 -
Mibi11g0671 420 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 195 238 IPR015940 -
Mibi11g0671 420 Pfam Ubiquitin family 65 138 IPR000626 GO:0005515
Mibi11g0671 420 FunFam UV excision repair protein RAD23 homolog 367 415 - -
Mibi11g0671 420 SMART uba_6 197 237 IPR015940 -
Mibi11g0671 420 SMART uba_6 376 413 IPR015940 -
Mibi11g0671 420 FunFam UV excision repair protein RAD23 homolog 190 240 - -
Mibi11g0671 420 SMART ubq_7 63 137 IPR000626 GO:0005515
Mibi11g0671 420 SMART CBM 293 336 IPR006636 -
Mibi11g0671 420 CDD Ubl_Rad23 63 136 - -
Mibi11g0671 420 FunFam UV excision repair protein RAD23 B 285 351 - -
Mibi11g0671 420 Pfam XPC-binding domain 295 350 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mibi11g0671 420 SUPERFAMILY Ubiquitin-like 63 146 IPR029071 -
Mibi11g0671 420 Pfam UBA/TS-N domain 376 411 IPR015940 -
Mibi11g0671 420 Pfam UBA/TS-N domain 197 235 IPR015940 -
Mibi11g0671 420 ProSiteProfiles Ubiquitin domain profile. 63 141 IPR000626 GO:0005515
Mibi11g0671 420 SUPERFAMILY XPC-binding domain 292 358 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0671 Mibi-ChrMibi11 15926701 15934648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0671 63 136 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 2.02e-08 50.8