Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0629 ATGGAGGAAGACGAAGACGAAGACGAAGACAGAATTTTGCTTTATAGTTTGGGCATAGAGTCTGCCAATCACGAATGCATTGAAAGAGATGTACTAGCTGAGGCCCAGAATGATGTGGAGATCGTTACTGAAGCTGATGAGATCTCAAAAGAAGAATCTCCTCAGAAATATGAAAATGTTGATCCATCATCTATTAGCAAAGCAGAACTTTATCATAAGTTGAGGGCCGTAGATTTTGAAATAAATGCAGTTGCTTCCACTATCTATCAAGTGGAAAACGTTGATAGTAATGGAGATTGTATTGATGGTGGTGCTGCCAATGGGGAGCAAGGGATTACCAAGGATACTTCCTCCAATGATTTGAATATTCAACATGTTCTTGCTGCTGATAGGTTAGAAAGCCTAAAGAAGACAAAGGCTCAACTAGAAAAAGAACTTTCAGGTTTGTTCAAGGAGAAGCCTTGCAAAAGTATTGATCGGGACAAAGAGAACGAGATCTTTAATTTGGTTAAGGAAGATCAAAGATCCAAGAGGAAGCCTGAAGAAGTTAAAAGTTTGCCAAAAGGCTCAGGGAAACGGCATAAAACTGTTTCATTTAATGATGATGTTGATTTTGATGCAGTTTTAGATGCTGCCTCAGCAGGCTTCGTTGAGACAGAAAGGGACCATTTGGTAAGGAAAGGGATTTTGACCCCCTTTTCTAACCTGAAGGGCTTTGAGCGTCGCTTTCAACAATCAGAAACATCTAGTAGTCATGGTGTGAGTCAAGAAGAAAAGACAGACGATCTTGCTTCTTCTATTATTGAAAGAGCTGCCCAGTCAATGTCTGAGGCAGCAAGAGCTCGCCCAACCACCAAGTTGCTTGAGTCTGGTGATCTGCCGAAGCTTGATGCACCCACTCGTCCTTTTGTCAGACTCAAAGTACCACTAAAACAAAAACTTCCTCAGTCCCAAGAAAGAGATCTAGAAAAGAAAAATAATTTGAAAAGGAAAAAAAGGCGACCTTTGCCTGGTGCGAAATGGACAGAGCGTGTTTCAAGTGAGGAAATACATTCAATAGAGTCTGAGGAAGCAAGTGGTTGCCTGGACCCTTCCATCTGTGAAAATTTAGATGCTCAGGATTTTGATGGTGCTGATCATGATCCTTCTTTTATAACTTTAGAAGGCGGGTTGAAAATCCCTGATAATGTTTTTGATGCACTGTTTGACTACCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGGGATGAGATGGGTCTTGGAAAAACCATCCAGATCATATCCTTTCTTGGTGCATTGCACTTTAGTGGCATGTATAAACCAAGCATTATCATTTGTCCTGTGACCCTCTTGCGACAGTGGAAAAGGGAAGTTAAAAAATGGTACCCGAAATTTCATGTAGAGCTCTTGCATGATTCTGCACGAGATCCTGACGTTAGAAAGAAGAAATCCAAATGTGATGAATCAGACTATGATAGTAATAGTTCAAGTGACAGTGACTATGAGATCAATATTCAATCAAAAAGCACAAGAAAATGGGAATCCCTGATTAGTCGTGTAATGAGAACGGAATCTGGATTGCTTATCACAACCTATGAGCAGCTCAGAATATTGAGGGACCTGTTACTTGACATTGAATGGGGTTACGCAATTCTTGATGAAGGACACAGAATAAGGAATCCAAATGCTGAAATCACCCTAGTTTGCAAGCAGCTACAGACTGTACACCGCGTCATAATGACTGGATCACCTATACAGAACAAACTGACTGAACTTTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCTGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCAACAGCTTACAGGTGTGCTGTGATGCTTCGTGATTTGATCATGCCTTATTTTCTTCGGAGGATGAAAGCAGATGTGGATGCCCACCTTCCAAAGAAAACTGAGCATGTTTTATTTTGTAGCCTTACTACTGAGCAAGTATCTGCTTATAGAGCATTTTTGGCAAGCTCTGAAGTGGAGCAAATTTTGGATGGACGGAAGAATTCTCTTTATGGAATTGATGTGATGCGTAAGCTTTGCAACCACCCAGACTTGCTTGAAAGGGAACATGCATTCAGAAATCCAGACTATGGAAATCCAGAGCGCAGTGGGAAAATGAAAGTTGTGGCACAGGTGCTTAATGTTTGGAAGGAACAGGGTCATCGGGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTATTGAGAATTTTTTGACCACTTCTGGTCATAATTACCGGAGAATGGATGGAGTCACTCCCATAAAGCAAAGGATGGCTTTAATTGATGAATTTAATGAGTCAAAGGAAGTACTTATATTCATTTTAACAACCAAAGTTGGGGGCTTGGGGACGAATCTTACTGGTGCAGACAGGGTAATTATCTTTGACCCTGATTGGAATCCTTCAACTGACGTTCAGGCCAGAGAACGAGCTTGGCGAATTGGTCAGACACGGGATGTGACAGTATATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATATACAAACATTTTCTTACTAATAAGATATTGAAGAACCCACAGCAGAAAAGATTCTTTAAAGCTCGAGATATGAAAGATGTTTTTACATTGAATGTGGATGACAAAAGTGGGTCAACTGAAACGTCAACTATTTTCAGTCAAATATCTGAAGATGTAAATATTGTTGGGGCACATGAAGATAAGCAGGAGAAGCATAAACATCCCCAAACTGCTGAACCAGGTTCTGATGATGTTGTAGTTAATAGCAATGGCAGGTCAAAAACAAAATCAGCCAAGGGAAAGGGAAAAGAGGAAAGAAATCGTCTGGATGAAGCAGATGAGGAAACAAATATATTGAAAAGTCTTTTTGATGCGCATGGGTTACATAGTGCTGTGAACCATGACTTGATCATGAATGCCAATGATGAGGAAAAGATGAGGCTTGAGGAGCAAGCTTTCCAGGTTGCACAGAGAGCTGCAGAAGCTTTACGTCAGTCACGAAAGCTTAGAAGTCGTGAAAGCATCGCTGTTCCTACATGGACAGGCAGGTCAGGGACTGCTGGTGCACCATCATCTTTTCGTCAGAAGTTTGGTTCAACTGTGAATTCACAGTTGGTAAATAATTGCAAAGAATCTGATGAATTGACTGGTGATAGAACTAGAAAATTAAATGGATATGCTGCTGGGGCATCATCTAGTAAGGCATTATCTTCTGCTGAACTTTTGGCTCGAATCCGGGGTAACCAAGAAAAGGCCATTGGTGATGGTCTAGATCATCAGTTTGGTATGGCCGTTAACCTATCTAATCAAGCAAGATCTGTGGATGTTGGGTCCTCTAGGGCTTGGAAGAAAGTAGATGGAGTGCAACCTGAGGTATTGATTCGACAAATCTGTACATTTCTACAACAGAGAGGTGGCCAGTCTGATTCTTCCTGCATAGTCCAGCATTTTAAGGACAGGATACCCTCAACAGATCTTGCTTTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGGAAAAAGGGCCTAACGGATCACATTGGATTCTGAAGCCAGACTATGAAGAATAA 3699 0.4107 MEEDEDEDEDRILLYSLGIESANHECIERDVLAEAQNDVEIVTEADEISKEESPQKYENVDPSSISKAELYHKLRAVDFEINAVASTIYQVENVDSNGDCIDGGAANGEQGITKDTSSNDLNIQHVLAADRLESLKKTKAQLEKELSGLFKEKPCKSIDRDKENEIFNLVKEDQRSKRKPEEVKSLPKGSGKRHKTVSFNDDVDFDAVLDAASAGFVETERDHLVRKGILTPFSNLKGFERRFQQSETSSSHGVSQEEKTDDLASSIIERAAQSMSEAARARPTTKLLESGDLPKLDAPTRPFVRLKVPLKQKLPQSQERDLEKKNNLKRKKRRPLPGAKWTERVSSEEIHSIESEEASGCLDPSICENLDAQDFDGADHDPSFITLEGGLKIPDNVFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQIISFLGALHFSGMYKPSIIICPVTLLRQWKREVKKWYPKFHVELLHDSARDPDVRKKKSKCDESDYDSNSSSDSDYEINIQSKSTRKWESLISRVMRTESGLLITTYEQLRILRDLLLDIEWGYAILDEGHRIRNPNAEITLVCKQLQTVHRVIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVMLRDLIMPYFLRRMKADVDAHLPKKTEHVLFCSLTTEQVSAYRAFLASSEVEQILDGRKNSLYGIDVMRKLCNHPDLLEREHAFRNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIIENFLTTSGHNYRRMDGVTPIKQRMALIDEFNESKEVLIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDVQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDVFTLNVDDKSGSTETSTIFSQISEDVNIVGAHEDKQEKHKHPQTAEPGSDDVVVNSNGRSKTKSAKGKGKEERNRLDEADEETNILKSLFDAHGLHSAVNHDLIMNANDEEKMRLEEQAFQVAQRAAEALRQSRKLRSRESIAVPTWTGRSGTAGAPSSFRQKFGSTVNSQLVNNCKESDELTGDRTRKLNGYAAGASSSKALSSAELLARIRGNQEKAIGDGLDHQFGMAVNLSNQARSVDVGSSRAWKKVDGVQPEVLIRQICTFLQQRGGQSDSSCIVQHFKDRIPSTDLALFKNLLKEIATLEKGPNGSHWILKPDYEE 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0629 1232 MobiDBLite consensus disorder prediction 170 197 - -
Mibi11g0629 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 664 923 IPR027417 -
Mibi11g0629 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 662 IPR027417 -
Mibi11g0629 1232 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 749 908 IPR001650 -
Mibi11g0629 1232 PANTHER SNF2/RAD54 FAMILY MEMBER 174 1214 - -
Mibi11g0629 1232 Pfam Helicase conserved C-terminal domain 751 858 IPR001650 -
Mibi11g0629 1232 Coils Coil 125 152 - -
Mibi11g0629 1232 CDD SF2_C_SNF 744 869 - -
Mibi11g0629 1232 Gene3D - 668 958 IPR027417 -
Mibi11g0629 1232 MobiDBLite consensus disorder prediction 307 348 - -
Mibi11g0629 1232 Gene3D - 384 661 IPR038718 -
Mibi11g0629 1232 Pfam SNF2-related domain 404 726 IPR000330 GO:0005524|GO:0140658
Mibi11g0629 1232 MobiDBLite consensus disorder prediction 973 988 - -
Mibi11g0629 1232 FunFam DNA excision repair protein ERCC-6 669 947 - -
Mibi11g0629 1232 FunFam Protein CHROMATIN REMODELING 8 379 661 - -
Mibi11g0629 1232 CDD DEXHc_ERCC6 401 611 - -
Mibi11g0629 1232 MobiDBLite consensus disorder prediction 489 510 - -
Mibi11g0629 1232 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 413 612 IPR014001 -
Mibi11g0629 1232 SMART ultradead3 397 620 IPR014001 -
Mibi11g0629 1232 SMART helicmild6 775 858 IPR001650 -
Mibi11g0629 1232 MobiDBLite consensus disorder prediction 273 294 - -
Mibi11g0629 1232 MobiDBLite consensus disorder prediction 942 988 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0629 Mibi-ChrMibi11 14064066 14070089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0629 701 912 RAD5 or RAD16-like Gene Family AT5G22750 30.698 5.84e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi11g0629 SNF2_N 2e-60 CL0023