Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0564 ATGGCAAAGTCTGGCGTGGCGGCGGTGGGCCCCGATCCGGCGGCGAAGGTGTTGGAGTTGAAGAAGGAGTTGAAGAGATTGGTGAATTCAATCATCGATGATGATGATGATGATGATGAAGATTTTAGCATCCAAACCATTGATCAAGCTAAGGAAGTTCTTTCTACTCTTAAAGACCTCAAGCTTAGAAAGAAATCACAATCTTCACAATCTTCACAACAATCTTCGTCTTTGATGAAGATGAACATAAATTCAGGTTTTCCTGATGAATTTAAGTGCCCTATTTCTAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGAAAGACATATGATAGGCCTTTTATTCAAAAATGGCTGAAGGCTGGGAACAGAACTTGTCCTCAAACACAACAAGTCCTCTCACACACTGTCCTCACTCCTAATCTCCTCATAAGGGAGATGATAGAACAATGGTGCAAGAACCATGGGGTGGAATTATCCAACCAACTTCACTATATTTACAATGAGGAAGACATAATAACAAACGCTGACCGTGATCATTTTCATTCTCTGATTGAGAAAATGTCCTCATCATCACTTTCTGAGCAAAAAGCAGCCGCCAAGCAGTTTAGGTTGTTGACAAAGAAGATGCCCTTGTATAGAACACTCTTCGGTGAGACCCCACAAGCCATTTCAGAGATTCTCAAACCAGTCTCTTCAAGCAACTCCTTCAACAACATTCATTCTGATCTCCAAGAAGACGTGATCACAACACTTTTGAACATCTCAATTCATGACAACAACAAGAAGCTTGTGGCAGAAACTCCCTTGGTGATTCCACTTCTTGTGAAAGCCTTAAGATCAGGAACTATAGAAACCAGAAGCAATGCTGCAGCTACCCTTTTTACTTTATCTGCTCTAGACTCGAACAAGGAGCTTATAGGGAAATCCGGCGCCTTAAAGCCGTTAATTGACCTCTTGGAGGAAGGCCATCCCTTAGCCATTAAAGATGTTGCTTCAGCAATTTTCACCTTGTGTGTGGTTCACGAGAACAAGGCAAGAGCAGTGAGAGAAGGGGCGGTAAGTGTCATATTGAGGAAGATCTCAAGCAGGGTCTACGTCGATGAACTGCTTACAATCCTTGCGCTGATCTCGAGTCATCAAAAGGCTGTTCAGGACATGGTAGATCTTGGAGCTGTTCCTAACTTGCTGAGTATCATGAGGGAGAGCAATTGCGAGCGAAACAAGGAGAATTGCATAGCAATTCTTCAAACTATATGTCAGTATGACAGAGCAAAGTTGAAGGACATGAAAGAAGAGGAAATTACCTTTAGAACCATTACTGATCTTGCATTGAATGGAACTTCAAGGGCTAAGAGGAAGGCTAGTGGAATTCTTGAGAGACTTAATAGAGTTGTTAATATTACACACACTGCATAA 1425 0.4211 MAKSGVAAVGPDPAAKVLELKKELKRLVNSIIDDDDDDDEDFSIQTIDQAKEVLSTLKDLKLRKKSQSSQSSQQSSSLMKMNINSGFPDEFKCPISKELMRDPVIVASGKTYDRPFIQKWLKAGNRTCPQTQQVLSHTVLTPNLLIREMIEQWCKNHGVELSNQLHYIYNEEDIITNADRDHFHSLIEKMSSSSLSEQKAAAKQFRLLTKKMPLYRTLFGETPQAISEILKPVSSSNSFNNIHSDLQEDVITTLLNISIHDNNKKLVAETPLVIPLLVKALRSGTIETRSNAAATLFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAIKDVASAIFTLCVVHENKARAVREGAVSVILRKISSRVYVDELLTILALISSHQKAVQDMVDLGAVPNLLSIMRESNCERNKENCIAILQTICQYDRAKLKDMKEEEITFRTITDLALNGTSRAKRKASGILERLNRVVNITHTA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0564 474 SMART Ubox_2 90 153 IPR003613 GO:0004842|GO:0016567
Mibi11g0564 474 Gene3D - 163 468 IPR011989 -
Mibi11g0564 474 SMART arm_5 302 342 IPR000225 GO:0005515
Mibi11g0564 474 SMART arm_5 382 423 IPR000225 GO:0005515
Mibi11g0564 474 SMART arm_5 260 301 IPR000225 GO:0005515
Mibi11g0564 474 FunFam RING-type E3 ubiquitin transferase 173 470 - -
Mibi11g0564 474 Pfam U-box domain 88 157 IPR003613 GO:0004842|GO:0016567
Mibi11g0564 474 SUPERFAMILY RING/U-box 86 161 - -
Mibi11g0564 474 FunFam RING-type E3 ubiquitin transferase 86 160 - -
Mibi11g0564 474 Coils Coil 474 474 - -
Mibi11g0564 474 PANTHER U BOX DOMAIN-CONTAINING 19 464 - -
Mibi11g0564 474 CDD RING-Ubox_PUB 91 133 IPR045210 -
Mibi11g0564 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 160 IPR013083 -
Mibi11g0564 474 ProSiteProfiles U-box domain profile. 86 160 IPR003613 GO:0004842|GO:0016567
Mibi11g0564 474 SUPERFAMILY ARM repeat 169 464 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0564 Mibi-ChrMibi11 11592204 11594942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0564 149 474 U-box Gene Family AT3G07360 60.671 4.73e-135 390