Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0551 ATGGCGCATAGGTTGCTTAGAGATCATGAAGCAGACGGTTGGGAAAGATCTGACTTTCCTATTATATGTGAATCATGCCTCGGCGACAACCCATATGTTCGCATGACAAGGGCTGATTATGATAAGGAGTGTAAGATTTGCACACGGCCATTTACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAAGTGAAATCTGCCAAACATGTAGTAAATTGAAAAATGTTTGTCAAGTCTGCCTTCTGGATCTTGAGTATGGGTTACCAGTTCAAGTCCGAGATACAGCTCTCAGCATCAGTTCCCATGATACTATTCCAAAGAGTGATGTTAATCGGGAGTATTTTGCTGAAGAACACGATCGCAAGACTCGAGCTGGTTTGGATTATGAATCCTCGTATGGGAAAGTACGTCCAAATGATACTATTTTGAAGCTTCAAAGGACAACACCATACTACAAAAGAAACCGGGCTCATATTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGAGGAGCTGAGTGCCCTTATAGGCATGAAATGCCAGTGACCGGGGAGTTGTCACAGCAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCTGTGGCATTGAAGTTACTTGGCAAGGCAGGAGAGATGACCTCTCTGGAACCTCCAGAGGATGAGACCATTAGAACTCTTTATGTTGGTGGGCTTGATGCTAGGGTCAGTGAGCAGGATCTGCGCGACCACTTTTATGCCCATGGCGAAATAGAATCCATCAAGATGGTTCTGCAAAGGGCTTGTTCTTTTGTAACCTACACAACAAGAGAAGGTGCAGAAAAAGCAGCAGAAGAGCTCTCCAACAAGCTAGTTATCAAGGGCCTAAGGTTGAAACTAATGTGGGGTAGACCTCAGACTGCAAAACCTGACTCCGAAAGTTCTGATCAAGCGAGACAGCATGCATCTGTGGCTCATAGTGGGTTGTTGCCTCGAGCCGTCATATCACAGCAGCAGAGCCAGGATCAAACCCAGGGGCATTACTATAACATTCCACCTCCTCCTCAGCAAGATAGAAGTTACTATCCATCAATGGATCCTCAGAGAATGGGTGCTGTTATTCCGTCCCAAGAAGGTGGTCCTCCTGGTGGGGGCACTGGGACCGGAGAGAACAACAAACCCAATTTGGAGAAGCAGCAAATACAGCATTTTGCCCATCCAATGATGCCTCCACCACCTGGTCAATATCACCATCATCAGTATTATCCTCCTCCCCCATATGGTTATATGCCACCTGTACCTGGTTATCAACAGTACCCGCCACCATATAACCATGGGATGGCTACATCTCAGCCACCGGCTGTAAACCAGCCGTATCAGCAATCCATGCAGCCGGGTTCATCTGCTCCCTCAGGGTTGGCATCAACAGGATCAGGACCAGCTAGTGGTTCTGCACCAGCTGAAACGGGAGCATCAACCTCAGCCTCACAACAGCAGTGA 1488 0.4677 MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDTIPKSDVNREYFAEEHDRKTRAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEPPEDETIRTLYVGGLDARVSEQDLRDHFYAHGEIESIKMVLQRACSFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKPDSESSDQARQHASVAHSGLLPRAVISQQQSQDQTQGHYYNIPPPPQQDRSYYPSMDPQRMGAVIPSQEGGPPGGGTGTGENNKPNLEKQQIQHFAHPMMPPPPGQYHHHQYYPPPPYGYMPPVPGYQQYPPPYNHGMATSQPPAVNQPYQQSMQPGSSAPSGLASTGSGPASGSAPAETGASTSASQQQ 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0551 495 Gene3D - 149 212 - -
Mibi11g0551 495 SMART rrm1_1 229 297 IPR000504 GO:0003723
Mibi11g0551 495 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Mibi11g0551 495 MobiDBLite consensus disorder prediction 301 390 - -
Mibi11g0551 495 MobiDBLite consensus disorder prediction 436 495 - -
Mibi11g0551 495 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 379 IPR039171 GO:0003723
Mibi11g0551 495 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Mibi11g0551 495 MobiDBLite consensus disorder prediction 439 495 - -
Mibi11g0551 495 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Mibi11g0551 495 Pfam Torus domain 141 194 IPR032297 -
Mibi11g0551 495 SUPERFAMILY RNA-binding domain, RBD 221 308 IPR035979 GO:0003676
Mibi11g0551 495 MobiDBLite consensus disorder prediction 304 318 - -
Mibi11g0551 495 MobiDBLite consensus disorder prediction 328 347 - -
Mibi11g0551 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Mibi11g0551 495 CDD RRM_RBM22 227 300 - -
Mibi11g0551 495 Gene3D - 213 311 IPR012677 -
Mibi11g0551 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Mibi11g0551 495 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Mibi11g0551 495 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0551 Mibi-ChrMibi11 11181479 11185658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0551 229 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.848 6.76e-06 47.0