Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0404 ATGATTAGGGTTAGGGCAATCACGCGTATGGAAGCTTCCCCAGACCCCATCGTTCCTCCTGTTACTTCCAGCTCCAATCGGTACGGTATCCCTTCTGCTTCTAATATCATTCAAGCGCCTTTATCATTATTGTTGGAACATTTAGGGATTCTTCGAAGTAGTAGGTCTAATAATCAACAGGATTCTGAGCCTTTGATAATCAACAATAATCGTTTGTCTTCTGGGTTTCGTGATGTTCTTCGGAATAATCGTGTTGATGATTCGTCTTCTGTTGTGGTTCCTAATGATGGGGAGGTGTCGATTAGTATTATTGGGTCTGGGGAACAGAGGATTGATAGGGAAGGTGGGGAAGTGAGGGAGGTTTTGTCTCAGAATGATGTTTCGATACCGGCGCAAACGATTACTTCTGGTTTGGGGAATCAAGAACGTTCTAGAAGTGAGCATGTTGTTGTGGAAGAGGGTGTTTCTCAATCTGTGAATGGTGGTAATACTGATGCTGAGGCTGGTGGTGATGGGGTTGGTGCTAATAATAATAATAATGGTAGGGATTCTTCATCCCAGAGGTATGATATTCAACAGGCTGCTCGCTGGATTGAGCAGGTCCTTCCTTTTTCTTTGCTGTTGCTGGTTGTCTTCATTCGGCAGCATTTGCAAGGTTTTTTTGTTACAATTTGGGTTACTGCTGTCCTTTTCAAGTCAAATGACATTTTGCGGAAGCAGACAGCTCTGAAGGGAGAGAGGAAAGTCCCTGTATTGATTGCCATTTCTATTGCATTTACATTGCACGTGGTTGGTGTATATTGGTGGTGTCAGAATAACGATATGCTATACCCATTGGCCATGCTTCCTCCCAAAGTCATACCTCCATTTTGGCATGTTATTTTTATCATCACAGTGAATGATGCTTTGGTCCGCCAGGCAGGAATGGTATTCAAGTGTATTTTGTTGATGTATTACAAGAATGGCAGAGGGCGAAATTATCGTAAGCAGGGCCAAATGCTGACTTTAGTTGAGTATCTACTCCTTCTTTACCGTGCCTTATTGCCAACTCCTGTATGGTATCGCTTCTTCTTGAACAAGGAATACGGAAGCTTCTTTTCTTCATTGATGACAGGATTATATCTAACATTTAAGCTGACATCAGTCATCGAAAAGGTGCAATCCTTCTTTGCTGCAGTGAAGGCATTGTCACGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAACAGGTGAATGCTGTTGGTGATCTTTGTGCTATTTGCCAGGAAAAGATGCACACCCCAATCCTACTTTCTTGCAATCACATCTTCTGCGAAGAGTGTGTATCAGAATGGTTTGAGAGGGAAAGGACATGCCCGTTGTGCAGGGCTTTGGTGAAACCAGCTGATCTAAAATCATTTGGGGATGGCTCTACTAGTTTGTTTTTCCAGCTATTCTAA 1443 0.429 MIRVRAITRMEASPDPIVPPVTSSSNRYGIPSASNIIQAPLSLLLEHLGILRSSRSNNQQDSEPLIINNNRLSSGFRDVLRNNRVDDSSSVVVPNDGEVSISIIGSGEQRIDREGGEVREVLSQNDVSIPAQTITSGLGNQERSRSEHVVVEEGVSQSVNGGNTDAEAGGDGVGANNNNNGRDSSSQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWVTAVLFKSNDILRKQTALKGERKVPVLIAISIAFTLHVVGVYWWCQNNDMLYPLAMLPPKVIPPFWHVIFIITVNDALVRQAGMVFKCILLMYYKNGRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSFFSSLMTGLYLTFKLTSVIEKVQSFFAAVKALSRKEVHYGAYATSEQVNAVGDLCAICQEKMHTPILLSCNHIFCEECVSEWFERERTCPLCRALVKPADLKSFGDGSTSLFFQLF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0404 480 ProSitePatterns Zinc finger RING-type signature. 434 443 IPR017907 -
Mibi11g0404 480 ProSiteProfiles Zinc finger RING-type profile. 419 457 IPR001841 -
Mibi11g0404 480 SUPERFAMILY RING/U-box 411 462 - -
Mibi11g0404 480 MobiDBLite consensus disorder prediction 137 186 - -
Mibi11g0404 480 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Mibi11g0404 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 467 IPR013083 -
Mibi11g0404 480 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 25 480 IPR044235 GO:0061630|GO:1904294
Mibi11g0404 480 CDD RING-HC_RNFT1_like 418 457 - -
Mibi11g0404 480 SMART ring_2 419 456 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0404 Mibi-ChrMibi11 6685412 6689675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0404 24 480 C3H Transcription Factor Family AT5G01960 65.646 0.0 598