LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi11g0399	ATGGATGATGCTGGGCATCGTGAAAATGGAAGGCACAAAGCCGATCAATATAAATCAGCTCAGGGGCAGTGGTTGATGCAACATCAACCCTCAATGAAGCAAATTATGGCAATCATGGCTGAGAGAGATGCAGCTATTCAAGAGAGAAATCTAGCCCTTTCTGAAAAAAAGGCAGCCCTTGCTGAGCGTGATATGGCATTCTTGCAACGAGACACTGCTATCAACGAACGGAATACTGCCATTATGGAAAGAGATAATGCTATTGCTACCCTTCAATATCGAGAGAACTCCTTAGCCAGTGGTAGCATGTCTTCTTGCCCTCCAGGATGCCAAATTGCTCGAGGTGTCAAGCATGTGCATCATCCTCAGCAGCAAGTACACCACTTACCTCATATGGGGGATACTTCTTACGGCACACGGGAAATGCATGCTGGTGATGACCTTCCAACAGCATCCATGCCTAATGAAGCCGGGAAATCACGTCGGGCCAAGCGGCCAAAGGATGGTAAGTCAATTTCACCTAATAAGAAGGCACCAAGAGCAAAAAAGCTCAAGAGGGAGGGTGAAGACTTAAATAAGATGATGTTTGGAAAGGCACATGAGTGGAAGAGTGGTCAGGAAATGGTTAATGGAGGTGATGATCTTAACAAGCAGTTGGGGTCTTCGAAGGCAGATTGGAAAGGTCAAGACTTGGGGTTGAACCAGGTAGTATATGATGAGTCAACAATGCCAGCACCTGTATGCTCTTGTACTGGTGTTCTGAGACAGTGCTACAAATGGGGGAACGGGGGCTGGCAGTCTGCTTGTTGCACAACAACTCTATCAATGTATCCACTTCCAGCAGTTCCCAATAAGAGGCATGCTAGGGTTGGTGGACGAAAGATGAGTGGAGGCGCGTTCAATAAGCTTCTTAGCCGGCTTGCAGCAGAGGGCCATGATCTGTCAAACCCAGTTGACTTGAAGGACCACTGGGCCAAACATGGCACAAACCGCTATATAACAATCAAGTAG	1011	0.4728	MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAINERNTAIMERDNAIATLQYRENSLASGSMSSCPPGCQIARGVKHVHHPQQQVHHLPHMGDTSYGTREMHAGDDLPTASMPNEAGKSRRAKRPKDGKSISPNKKAPRAKKLKREGEDLNKMMFGKAHEWKSGQEMVNGGDDLNKQLGSSKADWKGQDLGLNQVVYDESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGGAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK	336

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi11g0399	336	MobiDBLite	consensus disorder prediction	134	188	-	-
	Mibi11g0399	336	MobiDBLite	consensus disorder prediction	158	175	-	-
	Mibi11g0399	336	Pfam	GAGA binding protein-like family	1	336	IPR010409	-
	Mibi11g0399	336	MobiDBLite	consensus disorder prediction	1	21	-	-
	Mibi11g0399	336	PANTHER	-	1	336	IPR010409	-
	Mibi11g0399	336	Coils	Coil	51	71	-	-
	Mibi11g0399	336	MobiDBLite	consensus disorder prediction	1	15	-	-
	Mibi11g0399	336	SMART	GAGA_bind_2	1	336	IPR010409	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi11g0399	Mibi-ChrMibi11	6598916	6600069	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi11g0399	65	336	BBR or BPC Transcription factor family	AT5G42520	63.699	3.25e-119	343

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BBR-BPC	Mibi11g0399		GAGA_bind	2.1e-106	No_clan

Showing 1 to 1 of 1 entries