LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi11g0359	ATGGAAGCTGAAGAATTGAGTTTGAAAATGGCTTCACGAACTTGCATGAATGCGGCTTGTGCTACATCTACGTCGGTTCAGTGGCGTAAAGGATGGGCCCTTAGATCCGGCGAATTCGCCGATCTATGTGATAAGTGCGGCTCTGCTTATGAGCAATCAATATTTTGCCACGTGTTTCACTCAAAAGATTCAGGTTGGAGGGAGTGCGCTTCATGTGGCAAGCGTCTGCATTGCGGATGCATTGCTTCTCAAAATTTGCTTGAGCTGCTTGATACTGGTGGGGTGGGCTGCATAGATTGTGCGAGAAATTCAGGACGTCCTAGTTCAACTATGGAAAAGCCTAATGGATCTGGTACATCAAAACTTGGAATTGGAAGTGAACTACAATGCTTATTGGTTCCTCACCAATTTAAAGGAGGCAATGTTGATAAATTGAGAGAGGTGCGAGTAGGAGATTATGTAGAGAATGATGGGCTTAGGGGTTGGCTCCATTCTCATAATGGTGCTACAAATGGGCCTTCTATGCGATTAAAACAAGAAGTTATGCCTTTTGTTGGGGAACTTGGAAGCACTTCAATATCACAATTCCATCCAGAGTCCAATGGATCATCTAAGGCTGTCAAAGTTGACAACTGCAAGACAGATGAAGAAATTAGAGATATGTATGAATCATTTGCCCAAACAAATTTGAGTATGACTCTTGGTGCTCCTTTAGGAAACTCAAACTCCTTTCGTAATGATGTTTTTGACGAGAGGGAGCATAGTAAGACATCATCTTCAACATTACCAGGGCCCAGATCCCGCCATCTCTTACCCAAGCCTCCTAGGTCAAGCATGGAGGTTAATGCAGGGATGGTATCTCAAATTCGCGTTGCCAGGCCACCTGCGGAAGGACGGGGGAGGAATCAGTTACTTCCCCGTTATTGGCCTAGAATCACTGATCAAGAGTTGCAGCAAATCTCTGGAGATTCAAATTCAATCATTGTGCCATTGTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTTCCAAAGGCTTGTGCTGAAACATATTTTCCTCCTATCTCTCAGCCAGAGGGCCTTCCCTTACGAATCCAAGATGTGAAAGGAAAAGAGTGGGTATTCCAGTTTAGATTTTGGCCAAACAATAACAGCAGAATGTATGTTCTTGAAGGGGTGACTCCCTGCATTCAGTCTATGCAGTTGCAAGCTGGGGATACTGTGACATTTAGTCGTATGGACCCTGAGGGAAAACTTATAATGGGGTTTCGGAAGGCTACGAATTCTTCTGCAGCTCAGGAATCTCATCCACCTAATATTCCCAATGGCAATCGTTCAAGTGAAACCTCCTATCCTGGTGTTTATGAGAATTTACCTGTATTAAGCGGCTACTCCGGCCTTCTTCAGTCATTAAAAGGAAGTTCAGAAGCCCACTTAAATGCACTGTCTAAAAAGTGGAATTCAGCTTGTGGGGACATGAATTGGCAAAATATTGTAATGCCTGAAGACAGGAAAAGAGAAGGATTGCCTCTGCCACCAGCGCTGGTTCCAGAGAAGAAAAAGACTCGTAATATTGGGCCAAAAAGCAAGAGATTGCTTATTGACAGCCAGGATGCACTGGAACTGAAACTAACCTGGGAAGAGGCTCAGGATTTGCTTCGTCCACCACCAGCAGTTAAGCCAAGCATTGTAATGATTGAAGATCATGTATTTGAAGAATATGAAGAACCTCCTATCTTTGGGAAGAGAAGTATATTTGTAGCCCGGTCAACTGGGATGCATGAACAATGGACTCAATGTGACAGTTGCTCAAAATGGCGAAAGTTGCCTGTGGACGTACTTGTTCCCCCTAAGTGGACCTGTGGGGACAATTCATGGGATCAGAGCAGGTGCTCATGTTCTGCCCCTTGTGAGCTCACCCCAAGGGAACTAGATAATCTTCTGAGATTAAATAAGGAATTCAAGAAACAAAGATTGGCGGCTAGCCACCGGCTGTCCCTGGAGCAGCACGAATCTTCTGGACTGGATGCTTTGGCCAATGCTGCAATACATGGAGACGGTGCAGGTGACTCTAGCAGGACACCAGTTGCTACCACCACAAAACACCCACGGCATAGACCTGGCTGCTCCTGCATTGTCTGCATCCAGCCACCAAGTGGAAAGGGAAAACACAAACCTACATGCACTTGCAATGTATGCATGACAGTTAAACGTCGGTTTAAGACCCTGATGATGCGAAAGAAGAAACGCCAATCCGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGCAGTCATGTGGGCCAAGGGACGAATCAGAAGTAGAAAGCACTTCTAGAAATTTAACTCCAGCTGATGGTTCTGAGACGGAAGCAAGGGCACCAAATGAGTTGGACTCAAGAAGTCAAACGGATGTGGCTGAAACTAGCAAGGGACAATTAGACTTGAATTGCGATCCTGATCGAAATGACATGCAAGCCGGCTCAAACGGTGTCAGCATGATGAGTCTACTTCAAGAAGCAGGTCTCCCTTTAGAAACATATCTGAAGCAAAATGGTCTTACTAGCTTGGTATCAGAGCAACAAGCAAATTCGGCTTCCAATGTGCAGGGGCAGGGGCAGACCACTAACGAGAGTGAGGAAAGACACGACGACGATTGTCGTGCTGCTTCTGATGTTAAGGAGCAAGAAAGCAGTAATGAAGAGAACAGTGGTAAAGACAAAAGCGAAAATAACCCCACTTCATGA	2763	0.4531	MEAEELSLKMASRTCMNAACATSTSVQWRKGWALRSGEFADLCDKCGSAYEQSIFCHVFHSKDSGWRECASCGKRLHCGCIASQNLLELLDTGGVGCIDCARNSGRPSSTMEKPNGSGTSKLGIGSELQCLLVPHQFKGGNVDKLREVRVGDYVENDGLRGWLHSHNGATNGPSMRLKQEVMPFVGELGSTSISQFHPESNGSSKAVKVDNCKTDEEIRDMYESFAQTNLSMTLGAPLGNSNSFRNDVFDEREHSKTSSSTLPGPRSRHLLPKPPRSSMEVNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSIIVPLFEKMLSASDAGRIGRLVLPKACAETYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSSAAQESHPPNIPNGNRSSETSYPGVYENLPVLSGYSGLLQSLKGSSEAHLNALSKKWNSACGDMNWQNIVMPEDRKREGLPLPPALVPEKKKTRNIGPKSKRLLIDSQDALELKLTWEEAQDLLRPPPAVKPSIVMIEDHVFEEYEEPPIFGKRSIFVARSTGMHEQWTQCDSCSKWRKLPVDVLVPPKWTCGDNSWDQSRCSCSAPCELTPRELDNLLRLNKEFKKQRLAASHRLSLEQHESSGLDALANAAIHGDGAGDSSRTPVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSCGPRDESEVESTSRNLTPADGSETEARAPNELDSRSQTDVAETSKGQLDLNCDPDRNDMQAGSNGVSMMSLLQEAGLPLETYLKQNGLTSLVSEQQANSASNVQGQGQTTNESEERHDDDCRAASDVKEQESSNEENSGKDKSENNPTS	920

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi11g0359	920	MobiDBLite	consensus disorder prediction	250	279	-	-
	Mibi11g0359	920	MobiDBLite	consensus disorder prediction	750	834	-	-
	Mibi11g0359	920	CDD	B3_DNA	330	431	IPR003340	GO:0003677
	Mibi11g0359	920	Gene3D	-	310	437	IPR015300	-
	Mibi11g0359	920	ProSiteProfiles	Zinc finger CW-type profile.	597	647	IPR011124	GO:0008270
	Mibi11g0359	920	Gene3D	-	600	656	-	-
	Mibi11g0359	920	SUPERFAMILY	DNA-binding pseudobarrel domain	330	432	IPR015300	-
	Mibi11g0359	920	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS07G0563300	12	872	-	-
	Mibi11g0359	920	Pfam	B3 DNA binding domain	332	431	IPR003340	GO:0003677
	Mibi11g0359	920	FunFam	B3 domain-containing transcription repressor VAL1	310	437	-	-
	Mibi11g0359	920	MobiDBLite	consensus disorder prediction	689	712	-	-
	Mibi11g0359	920	SMART	B3_2	332	432	IPR003340	GO:0003677
	Mibi11g0359	920	MobiDBLite	consensus disorder prediction	865	881	-	-
	Mibi11g0359	920	Pfam	CW-type Zinc Finger	602	644	IPR011124	GO:0008270
	Mibi11g0359	920	ProSiteProfiles	B3 DNA-binding domain profile.	332	433	IPR003340	GO:0003677
	Mibi11g0359	920	MobiDBLite	consensus disorder prediction	432	455	-	-
	Mibi11g0359	920	MobiDBLite	consensus disorder prediction	764	791	-	-
	Mibi11g0359	920	MobiDBLite	consensus disorder prediction	865	920	-	-
	Mibi11g0359	920	MobiDBLite	consensus disorder prediction	882	913	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi11g0359	Mibi-ChrMibi11	5857131	5863183	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi11g0359	13	897	B3 DNA Binding Superfamily	AT4G32010	50.840	0.0	829

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Mibi11g0359		B3	3e-15	CL0405