Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0347 ATGGCGATTCCTCCGCAAATATTCCCTCCTCGTAAACGACGACCATCTGCAACGTCGTTTATCTCCCCAAAGCTCACACAACTCGACCTTCTTCACTCTCTTCTCCACCTATCTCAAGAAATCTCATCTCTCAAGCCAATCCAATTCCTTCACAAACGAAATTCCTCCTCCATAATCCGAAAATCAAATCTCCTCTCTCTTCTCTTCGAAGAGTTAATCAAAACCTCAATCCCTCTCTCATTCCACTCTGTAATCCTCTGCTTCGAAGAAATGTACATAGTCTTACACCGAATCAAAACCTTGATTGAAGATTGCTCCAACGGAAGCAAAATGGCGTTATTGATGCAAAACGAAACAATCGCAGACAGTTTCCACAAAATCACTTCCGATTTATCCACTCTTCTGGATATTTTCCCTGTGAGAGAGCTTGAATTAAACGACGACGTTCGAGAACTCGTGATTCTGATCAGAAAACAGTGTACGGTATCCAAGCCTTTCGAAGATCTGAAGGATAAAGAACTCAGGAATGAAGTTTTAACCATGCTTGATCGGATTAAACAAGAGATCGTCCCCGATCATTCGAAACTAGCAGATATCTTCGAGAGATTGGAGATCCGTGATTCTTCTAGTTGCAGATCTGAGATCGAGAGTTTAGAAGACGAGATTCAAAATCGAAGCGATGAACAATCCAAATCAGATCTCGTCGCTTTGATCGGATTAGTACGTTACGCTAAATGCGTTCTGTACGGAGCTTCAACGACGTCGTTTCCTTCTTCTTCTTCTTCTACTTCTTCCTCCGGTGAATTTTCACGGCGGAAACAATCGTCGGAAATCGCAGTTCCGGCGGATTTCCGGTGTCCGATAACGCTCGAGGTTATGCGGGACCCAGTGGTCGTGGCAACAGGACAGACGTACGATCGAGATTCGATCAAGCTCTGGATTGAATCAGGGCACAACACGTGTCCGAAGACCGGTCAAAATATGGCCCACACGGACCTCATCCCAAACCGTGCATTGAAAAATCTCATAGCCATGTGGTGCCGAGAGCAGAAGATACTTTTTGATACAGCTGGCGTTAACGACAAACCTCACGCCGTTATCATCAGCAAAGCCGCCTTAGAAGCTACTAGAATGACGGCGTTATTCTTGGTCAACAAGTTGACTCTCTCTCCGTCAATTGATGCCTTAAACGGCGCCGTTTACGAGCTTCGTGTTTTAGCTAAGACAGATTCTGATAGCCGAGCTTGTATAGCCGAAGCCGGAGCCATTTCTCTGTTAGTTAGCCACTTAGCCTCACAGGAGGCCAACCTCCAAGTTAACGCCGTTACGACCATTCTCAACCTTTCCATTCTGGAAGCGAACAAAAAGAGGATAATGGAAACTGACGGCGCGTTAAACGGCGTTATCGAGGTGTTACATACGGGTGCCACGTGGGAGGCTAAGGCGAACGCAGCCGCCACAATATTCAGCTTGTGTGGGGTCCACACGTATAGGAGGAGGCTAGGGAGGAAGGCACGTGTCACGAGGGGGTTGGTTGAGCTGGCCAGGTGTGGTCCCACGGGTGCCAGGAGGGATGCTTTGGTGGCGATTCTGACACTTGCAGGTGATAGGGAGACTGTGGCAAGGTTGGTGGAGGGTGGGGTGGTGGAGATGGCGGCGGAGGTGATGGACGGGTTGCCGGAGGAGGCGGCGGCGATCCTCGAGGTGGTGGTGAAACGGGGCGGGTTGGTGGCGGTCGCCGCCGCCTTCAGGAGCGTTAAGAAATTGGGGGCCTTATTACGTGATGGTTCTGATAGGGTTAGGGAGAGCGCGGCGGCTACATTGGCCACAATGTGCAGGAAAGGTGGGTCCGACGTGGTGGCGGAATTGGCCGGATTGCCGGGGATTGAGAGGGTGATTTGGGAATTGATGGCTATTGGGAGTATTAGGGGGAAAAGAAAAGCTGCCACTTTGTTGAGGATTCTCCGGCGATGGGCCGTCGGCTTGGACGGTGGTGGGATAACGGATGGATTTTCAACGGCTATTACTTCATCAACGACCATGGTTTCAACTCAATAG 2058 0.4961 MAIPPQIFPPRKRRPSATSFISPKLTQLDLLHSLLHLSQEISSLKPIQFLHKRNSSSIIRKSNLLSLLFEELIKTSIPLSFHSVILCFEEMYIVLHRIKTLIEDCSNGSKMALLMQNETIADSFHKITSDLSTLLDIFPVRELELNDDVRELVILIRKQCTVSKPFEDLKDKELRNEVLTMLDRIKQEIVPDHSKLADIFERLEIRDSSSCRSEIESLEDEIQNRSDEQSKSDLVALIGLVRYAKCVLYGASTTSFPSSSSSTSSSGEFSRRKQSSEIAVPADFRCPITLEVMRDPVVVATGQTYDRDSIKLWIESGHNTCPKTGQNMAHTDLIPNRALKNLIAMWCREQKILFDTAGVNDKPHAVIISKAALEATRMTALFLVNKLTLSPSIDALNGAVYELRVLAKTDSDSRACIAEAGAISLLVSHLASQEANLQVNAVTTILNLSILEANKKRIMETDGALNGVIEVLHTGATWEAKANAAATIFSLCGVHTYRRRLGRKARVTRGLVELARCGPTGARRDALVAILTLAGDRETVARLVEGGVVEMAAEVMDGLPEEAAAILEVVVKRGGLVAVAAAFRSVKKLGALLRDGSDRVRESAAATLATMCRKGGSDVVAELAGLPGIERVIWELMAIGSIRGKRKAATLLRILRRWAVGLDGGGITDGFSTAITSSTTMVSTQ 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0347 685 SMART arm_5 410 450 IPR000225 GO:0005515
Mibi11g0347 685 SMART arm_5 572 613 IPR000225 GO:0005515
Mibi11g0347 685 SUPERFAMILY ARM repeat 386 655 IPR016024 -
Mibi11g0347 685 Pfam Armadillo/beta-catenin-like repeat 411 449 IPR000225 GO:0005515
Mibi11g0347 685 MobiDBLite consensus disorder prediction 253 272 - -
Mibi11g0347 685 PANTHER U BOX DOMAIN-CONTAINING 55 656 - -
Mibi11g0347 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Mibi11g0347 685 CDD RING-Ubox_PUB 284 326 IPR045210 -
Mibi11g0347 685 FunFam RING-type E3 ubiquitin transferase 277 353 - -
Mibi11g0347 685 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Mibi11g0347 685 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Mibi11g0347 685 Gene3D - 382 653 IPR011989 -
Mibi11g0347 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 355 IPR013083 -
Mibi11g0347 685 SUPERFAMILY RING/U-box 274 352 - -
Mibi11g0347 685 Pfam U-box domain 280 351 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0347 Mibi-ChrMibi11 5641505 5643562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0347 9 684 U-box Gene Family AT5G01830 56.176 0.0 721