Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0291 ATGTTCTTGGTTCACCAAAAAATTTTCTTTGCCAGAGGTTTGAAGAAACACTTGAAGAGGCTCAATGCCCCGAAGCACTGGATGCTTGACAAACTAGGCGGTGCTTTTGCCCCAAAGCCATCTTCTGGACCCCACAAGTCAAGGGAGTGCTTGCCACTTATCCTCATCCTGCGAAACAGGTTGAAGTATGCTCTCACTTATAGAGAAGTTATTGCCATCTTGATGCAGCGCCATGTGCTGGTTGATGGCAAGGTTAGGACCGATAAGACATATCCTGCTGGTTTCATGGATGTTGTCTCCATCCCCAAGACCAATGAAAACTTCCGCCTTCTTTATGATACCAAAGGTCGTTTCCGACTCCAGTCTGTTAGGGATGAAGAAGCAAAGTTCAAGCTTTGCAAGGTTAGATCTGTGCAATTTGGGCAGAAGGGCATTCCCTACCTCAACACCTACGATGGTCGTACTATCCGCTATCCTGATCCATTGATCAGAGCAAATGACACCATCAAGCTGGACTTGGAAACTAACAAGATTACTGACTTCATCAAGTTTGATGTGGGTAATGTGGTCATGGTTACCGGAGGAAGGAACAGAGGCCGTGTCGGTGTTATCAAGAACAGGGAGAAGCATAAGGGAAGTTTCGAGACCATCCACGTCCAGGATGCAACTGGCCATGAGTTTGCTACCCGTATGGGAAATGTGTTCACCATTGGCAAAGGTTCAAAGCCATGGGTCTCTCTCCCCAAAGGCCGTGGTATCAAGTTATCTATCATTGAGGAGGCTAGAAAGAGGCAGGCTGCTCAAAATGAGGCTACTGCATAA 822 0.4696 MFLVHQKIFFARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLQSVRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGSKPWVSLPKGRGIKLSIIEEARKRQAAQNEATA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0291 273 Pfam Ribosomal family S4e 104 178 IPR013845 -
Mibi11g0291 273 CDD S4 60 120 - -
Mibi11g0291 273 Gene3D - 131 181 IPR038237 -
Mibi11g0291 273 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 12 263 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mibi11g0291 273 Hamap 30S ribosomal protein S4e [rps4e]. 16 247 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mibi11g0291 273 PIRSF RPS4a_RPS4e 10 250 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mibi11g0291 273 Pfam RS4NT (NUC023) domain 12 48 IPR013843 -
Mibi11g0291 273 FunFam 40S ribosomal protein S4 184 254 - -
Mibi11g0291 273 SMART s4_6 51 115 IPR002942 GO:0003723
Mibi11g0291 273 FunFam 40S ribosomal protein S4 10 126 - -
Mibi11g0291 273 Pfam KOW motif 186 219 IPR005824 -
Mibi11g0291 273 ProSiteProfiles S4 RNA-binding domain profile. 51 113 - -
Mibi11g0291 273 Pfam S4 domain 56 99 IPR002942 GO:0003723
Mibi11g0291 273 Pfam 40S ribosomal protein S4 C-terminus 221 267 IPR032277 -
Mibi11g0291 273 Gene3D - 10 126 IPR036986 GO:0003723
Mibi11g0291 273 CDD KOW_RPS4 184 238 IPR041982 -
Mibi11g0291 273 ProSitePatterns Ribosomal protein S4e signature. 17 31 IPR018199 -
Mibi11g0291 273 Gene3D - 184 254 IPR014722 -
Mibi11g0291 273 SMART kow_9 183 210 IPR005824 -
Mibi11g0291 273 FunFam 40S ribosomal protein S4 131 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0291 Mibi-ChrMibi11 4559331 4561249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0291 10 271 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 90.076 0.0 504