LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi11g0284	ATGACGACTGATACCTTTTGTGGGAACAAGACATCGCGTAAGAGACGAAGAAGCGGGAGTGGCTCTGTCATAGACACCCTTGAGAAGTGGAAGAAGTACAACAGTGAGCTTGAGTTTTTAAAAAATGGAGCAAAGAAATCGAGTCCCAGAATCCCAGCGAAAGGATCGAGAAAAGGATGCATGAGAGGCAAAGGTGGGCCTGAAAACTCAGATTGCAACTACAGAGGAGTGAGGCAGAGGATTTGGGGCAAATGGGTGGCAGAAATTCGTGAACCCATTACTGGAAATCATAGTAACGTGGGAAACAAGAAACCAAATCGTTTATGGCTTGGCACTTTCTCTACTGCACTTGAAGCTGCTCTTGCTTATGACGAGGCAGCCAGAGCCATGTATGGTCCTTGCGCTCGCTTGAACTTTCCTGATTATAATATGGAAGGAGAAGAAGGAGAAGAAGAACACACGTGCTCTAATGAGGAAATAGAGAAGAAGAATGAGGTTGTTCTAGTGAAGACTGAAGAAGAAACAGAGGATTCTGGTGTCATTGAAAGTGAAGATTCCTTTGGGAAGAAGCAGATGGAGGAAATGGATTCTGAGATTCTGAGATTTTGTACATCTGATGAGGAATATAAAGCTTCTGCAGAGAGAAAATTTGAAGATGAGGAGGGTTTGAATAATTCTGGTGATGGAAACTCCATGTTTGAAGAAAGAGAAACTGATGAGTGGCAGAGTGGTCATTTGCCTGTGTATGTGAACAACATGAAGGAGGCAGACCTGGAAGTGGGTTATTATGACTACAGTTTCTTGAGCCCTGATTATGATTTTGGCTTATTGGAAGAGAAAAATTTACTCGGTATATGGTTTCCACATATGGCTTCTTAA	879	0.4266	MTTDTFCGNKTSRKRRRSGSGSVIDTLEKWKKYNSELEFLKNGAKKSSPRIPAKGSRKGCMRGKGGPENSDCNYRGVRQRIWGKWVAEIREPITGNHSNVGNKKPNRLWLGTFSTALEAALAYDEAARAMYGPCARLNFPDYNMEGEEGEEEHTCSNEEIEKKNEVVLVKTEEETEDSGVIESEDSFGKKQMEEMDSEILRFCTSDEEYKASAERKFEDEEGLNNSGDGNSMFEERETDEWQSGHLPVYVNNMKEADLEVGYYDYSFLSPDYDFGLLEEKNLLGIWFPHMAS	292

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi11g0284	292	FunFam	Ethylene-responsive transcription factor 2	72	141	-	-
	Mibi11g0284	292	Pfam	AP2 domain	72	132	IPR001471	GO:0003700\|GO:0006355
	Mibi11g0284	292	SUPERFAMILY	DNA-binding domain	73	141	IPR016177	GO:0003677
	Mibi11g0284	292	Gene3D	AP2/ERF domain	73	141	IPR036955	GO:0003700\|GO:0006355
	Mibi11g0284	292	MobiDBLite	consensus disorder prediction	44	69	-	-
	Mibi11g0284	292	SMART	rav1_2	73	146	IPR001471	GO:0003700\|GO:0006355
	Mibi11g0284	292	CDD	AP2	72	141	IPR001471	GO:0003700\|GO:0006355
	Mibi11g0284	292	PRINTS	Ethylene responsive element binding protein signature	74	85	IPR001471	GO:0003700\|GO:0006355
	Mibi11g0284	292	PRINTS	Ethylene responsive element binding protein signature	106	122	IPR001471	GO:0003700\|GO:0006355
	Mibi11g0284	292	ProSiteProfiles	AP2/ERF domain profile.	73	140	IPR001471	GO:0003700\|GO:0006355
	Mibi11g0284	292	MobiDBLite	consensus disorder prediction	1	22	-	-
	Mibi11g0284	292	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	10	244	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi11g0284	Mibi-ChrMibi11	4515124	4516935	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi11g0284	5	284	AP2-EREBP Transcription Factor Family	AT2G40340	38.276	2.91e-46	157

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi11g0284		AP2	1.3e-13	CL0081