Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0216 ATGGGAAATTGTTGCAGATCTCCGGCCGCTGTAGCCAGAGAAGACGTCAAATCAAACTTCTCCAACCACGATCACAACAAACGAGACTCCAATGCCGTCAAGAAGAATCGAGTCACTGTTCTCACCGATGTTCCAAAGGAAAACATTGAAGAGAAGTATTTGGTCGATCGCGAGCTAGGTAGAGGAGAATTTGGGGTTACATATTTATGTATTGAGAGGGAAAGTAGGGAGCTTTTGGCTTGTAAGAGTATTTCCAAGCGGAAATTAAGGACTGCGGTGGATATTGAGGATGTGAGGAGAGAGGTGGCGATTATGAAGCATTTGCCTAAGAGTTCGAGTATTGTGAGCTTGAAGGAGGCTTGTGAGGATGACAATGCTGTGCATTTGGTGATGGAGTTGTGTGAGGGTGGTGAGCTTTTTGATAGGATTGTGGCGAGGGGGCATTATACTGAAAGAGCTGCTGCTGCTGTTACTAGGACCATTGTGGAGGTTGTTCAGCTTTGTCATAAACATGGGGTTATTCATAGGGACTTGAAGCCTGAGAATTTCTTGTTTGCTAATAAGAAAGAGAATTCTCCTTTGAAGGCTATTGATTTTGGCCTCTCCATTTTCTTCAAGCCAGGCGAGAGATTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCTGAGGTGCTCAAGCGAAACTATGGGCCAGAAATAGATATCTGGAGTGCGGGAGTAATTTTATATATCTTGCTCTGTGGTGTTCCCCCATTTTGGGCAGAATCCGAGCAAGGGGTTGCACAAGCTATTCTTCGAGGTCTTATAGATTTCAAGCGGGAACCTTGGCCTAGCATTTCTGAGAGTGCCAAAAGTCTTGTAAAGCAAATGTTAGAACCAGATCCCAAGCTCCGACTAACTGCCAAGCAGGTGCTTGAGCATCCTTGGCTTCAAAATGCTAAGAAGGCTCCTAACGTTCCCCTTGGTGATGTAGTCAAGTCTAGGCTTAAGCAGTTTTCAATGATGAACAGATTCAAAAGAAAAGCTCTGAGGGTCATTGCTGATTTCTTATCCACTGAAGAAGTTGAAGACATTAAAGAAATGTTCAAGAAGATGGACAGAGACAATGATGGCATTGTTTCTGTTGAAGAACTAAAAGCTGGATTTCAAAATTTTGGGTCTCAACTTGCTGAGTCTGAAGTTCAGAGTCTGATTGAAGCTGTAAATACTAATGGGAAGGGAACAGTTGACTATGGAGAATTTGTTGCTGTTTACCTGCATTTAAAACGGATGGCTAATGATGAGCATCTCCGCAAGGCCTTCTCTTATTTTGACAAAGATGGGAATGACTATATTGAACCGGATGAGCTGCGGGAAGCCTTGACAGAAGATGGTGCAGATGATTGTACAGATGTAGCAAATGATATTTTCCAGGAAGTAGACACAGACAAGGATGGCCGTATCAGTTATGATGAATTTGTGGCTATGATGAAAACTGGAACAGATTGGAGGAAAGCCTCTAGGCATTATTCACGAGGGAGATTCAACAGTTTGAGCTTAAAGTTGATGAAAGATGGTTCTGTAAACTTAGGGACTGAGGAAGGAGCTGCATGCGCCTACATACAAGCCCTTATTGTTTCTATAAAACAACCTGCCTTGGAGCCATTGATGTGTGACACGTATGATTCCTGTCTTTTAACCTCTCACCCTCTGTTCTGGTTAACAATGTTGAATCAAACTGCTTAG 1728 0.4294 MGNCCRSPAAVAREDVKSNFSNHDHNKRDSNAVKKNRVTVLTDVPKENIEEKYLVDRELGRGEFGVTYLCIERESRELLACKSISKRKLRTAVDIEDVRREVAIMKHLPKSSSIVSLKEACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVKQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSTEEVEDIKEMFKKMDRDNDGIVSVEELKAGFQNFGSQLAESEVQSLIEAVNTNGKGTVDYGEFVAVYLHLKRMANDEHLRKAFSYFDKDGNDYIEPDELREALTEDGADDCTDVANDIFQEVDTDKDGRISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSLKLMKDGSVNLGTEEGAACAYIQALIVSIKQPALEPLMCDTYDSCLLTSHPLFWLTMLNQTA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0216 575 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Mibi11g0216 575 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Mibi11g0216 575 SMART efh_1 358 386 IPR002048 GO:0005509
Mibi11g0216 575 SMART efh_1 394 422 IPR002048 GO:0005509
Mibi11g0216 575 SMART efh_1 430 458 IPR002048 GO:0005509
Mibi11g0216 575 SMART efh_1 466 494 IPR002048 GO:0005509
Mibi11g0216 575 ProSitePatterns EF-hand calcium-binding domain. 367 379 IPR018247 -
Mibi11g0216 575 FunFam Calcium-dependent protein kinase 7 320 495 - -
Mibi11g0216 575 PANTHER SERINE/THREONINE-PROTEIN KINASE 45 487 - -
Mibi11g0216 575 Gene3D - 320 495 - -
Mibi11g0216 575 Pfam Protein kinase domain 55 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g0216 575 CDD EFh 430 492 IPR002048 GO:0005509
Mibi11g0216 575 SMART serkin_6 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g0216 575 SUPERFAMILY Protein kinase-like (PK-like) 35 336 IPR011009 -
Mibi11g0216 575 CDD STKc_CAMK 52 310 - -
Mibi11g0216 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Mibi11g0216 575 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Mibi11g0216 575 ProSiteProfiles Protein kinase domain profile. 53 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g0216 575 Gene3D Transferase(Phosphotransferase) domain 1 139 319 - -
Mibi11g0216 575 Gene3D Phosphorylase Kinase; domain 1 54 138 - -
Mibi11g0216 575 FunFam calcium-dependent protein kinase 13 139 319 - -
Mibi11g0216 575 ProSiteProfiles EF-hand calcium-binding domain profile. 354 389 IPR002048 GO:0005509
Mibi11g0216 575 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Mibi11g0216 575 SUPERFAMILY EF-hand 340 518 IPR011992 -
Mibi11g0216 575 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Mibi11g0216 575 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
Mibi11g0216 575 Pfam EF-hand domain pair 429 492 IPR002048 GO:0005509
Mibi11g0216 575 Pfam EF-hand domain pair 357 419 IPR002048 GO:0005509
Mibi11g0216 575 FunFam Calcium-dependent protein kinase 1 55 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0216 Mibi-ChrMibi11 3247042 3251588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0216 1 412 EF-hand Containing Proteins AT3G51850 87.409 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mibi11g0216 Pkinase 5e-74 CL0016