Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0214 ATGGCTTCTAGTCCCCGCACCGTTGAGGAGATCTTCAAGGATTTTAGTGCCCGAAGAGCTGGTGTTGTTCGTGCCTTGACTCAAGATGTGGATGAATTTTATGGACTTTGTGATCCAGAAAAGGAGAATTTGTGCCTTTATGGGCATCCGAATGAAACCTGGGAAGTAACTCTTCCAGCAGAGGAAGTCCCCCCGGAGCTTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGGGATGGCATGATGCGCAAAGACTGGCTTTCTCTTGTTGCTGTTCACAGTGATTCATGGCTGCTTTCTGTCGCATTTTATCTTGGGGCCCGTCTCAACCGTAATGAAAGGAAGCGTTTATTTAGCCTGATCAATGATCTTCCCACTGTCTTCGAAGTTGTGTCTGAGAGGAAACCTCTAAAGGACAAGCCAACTGTGGACAGTGGAAGCAAGTCGAGGGGAAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAATCCGAAGTTTGCAGATGATGGTTATGAGGAGGATGAAGATGAACATAGTGAAACCCTTTGTGGAAGCTGTGGTGGAAATTACAATGCAGATGAATTTTGGATCGGTTGTGATGTCTGCGAGAGGTGGTTCCATGGGAAGTGTGTGAAGATTACCCCTGCCAAGGCTGAGAGCATAAAACAATACAAATGTCCATCTTGTATGAGGAGGGGCAAGCCCTAG 711 0.4684 MASSPRTVEEIFKDFSARRAGVVRALTQDVDEFYGLCDPEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMMRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVSERKPLKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADDGYEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCMRRGKP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0214 236 Pfam PHD-finger 184 232 IPR019787 -
Mibi11g0214 236 MobiDBLite consensus disorder prediction 146 163 - -
Mibi11g0214 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 231 IPR013083 -
Mibi11g0214 236 FunFam PHD finger alfin-like protein 176 232 - -
Mibi11g0214 236 SMART PHD_3 183 231 IPR001965 -
Mibi11g0214 236 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Mibi11g0214 236 PANTHER CPG BINDING PROTEIN 4 232 IPR045104 GO:0006355|GO:0042393
Mibi11g0214 236 CDD PHD_AL_plant 183 233 IPR044104 -
Mibi11g0214 236 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Mibi11g0214 236 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Mibi11g0214 236 MobiDBLite consensus disorder prediction 138 173 - -
Mibi11g0214 236 SUPERFAMILY FYVE/PHD zinc finger 172 234 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0214 Mibi-ChrMibi11 3196967 3199623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0214 2 230 Alfin-like Transcription Factor Family AT5G05610 79.565 1.13e-121 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mibi11g0214 Alfin 1.7e-68 No_clan