LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi11g0109	ATGGCTCAATGGTCAGGAAGAAGCGGTTTGGTTGGAGACTACATCGTCGGGAAGCAAATTGGGTCTGGTTCTTTCTCTGTGGTTTGGCATGGGAGGCATCGAGTTCATGGAACTGAGGTTGCCATTAAAGAGATCGCCACTGGTAGGCTTAACAAGAAGTTGCAGGAGAGTCTCATGTCTGAGATTTTCATCTTGAAGCAGATTAATCATCCTAATATAATTCACTTGCACGATATAATTGAGGTTCCTGGGAAGATACATCTTGTGTTAGAGTATTGTAGAGGAGGTGATCTCTCTATGTATATACAGCGCCAAGGAAGAGTCCAAGAAGGAACTGCAAAGCATTTTATGCAACAGCTAGCTACTGGCCTTCAAGTTCTTCGAGATAATAATCTTATTCATAGAGATTTGAAACCACAGAATCTTCTCCTCACCAGAAATGATGACAAGTCAGTTCTGAAGATTGCTGATTTTGGATTCGCAAGATCTCTGCAACCTAGGGGTCTTGCAGAAACCATGTGTGGTTCACCTCTCTACATGGCTCCAGAAATTATGCAACAACAGAAGTATGACGCCAAGGCAGACCTCTGGAGTGTGGGTACGATCTTATTTCAGCTTGTTACAGGAAGAACACCATTTACTGGGAATTCTCAACCGCAGTTACTACAGAACATTATGAAATCAACTGAACTGCCGTTCCCATCTGATAATCAAAGTCTGAGTTCTGAGTGTAAAGATTTATGTCAGAAATTGCTGCGACGTAGTCCAGTGGAACGGCTTACTTTTGAAGAATTTTTTAATCATCCATTTCTTTGTCAGAAGCAGCCAGAACAGGATAGATCATTGAGACGTGCAAGTTCTTCAAGGATGGTAGGTGAAATTTGCTCAACAGAGCCCAATCCTTTCAGAAGGAACAAGGAAAATCATCAGGAGGACTGCTTACCTTTCTTTTTGGATGATGATACTCGTGGTCCTGAGGGAAGTCCATCTTTTCCGAGGAAGAAATCCTCAATAAAGTCTACGTATGGATTTGACCTTACTACACAGCAAGATAGAGCAGGCGCAGCATTTGCTAGTTCTACTAACGTAAATTTTACTCCCCGCCAGCAACCTGAAAAAAGTGCTATAAGGTTGGAGGGCCTTAGAACCTCAGCAAGTAATCTCGCTGATCCGCTAGGGTCTCTAGAACAGAGATTGGCAAACACTAGTTCAAGAGTTGCAGACTCACTTGAGAATATTGATCAAGATTATGTTCTTGTGTCTGGACCTCCTATGGATGTCTCATCATCTTCTGTGAGTGCTTCAAAGCCTAGCCATTTTCCATATAGATCAGGTGCCTCCCTACAGGAGTCTTCTAATTTAATTGATAGAGTAAGTTCTCCGATGCCAATAATTGGTGCTGCTACCAGTAGCACATATCAAATTGGAAGTTCAGAAAGTCAGGACTCTGGTCCAGGGACTTCACCTGCGTCAATGGATACAGGAGATGAGCAGCCATCAGCTGACTGCATGACCAGAATAAAATCATTGCAACAGTGTGCATCCGCCATAACTGAATTAGTTCACGAAAAGATAGAGGCTAGAAAGCAGCTGGAAGCATTCTCCATTCAGCTCGTCATTCTTGCAATTTGGAAGCAAGCACTACACATATGTCATGCACAGGCTGCCTCTGCCATGGAAGGAAGTCCGAGTCAAGAAACAACTAGATGTAGGAGGAGCACCAACATGAAGCATGGCAGTTCTGATTCAGAAGAATGCCTTGATGGAAATGTGCAAGGGCCAAAGGATATTCTATCTCAGATTGAAAGTGAATTTCTGAGGGAAATTGAACTTGCTGAAGAATTTGCGAAGGCTGTTGAGCCTGCAAATACAGAGATGCCAGATGCTATGGAGACAATATTTCAGTCTGCTCTTGCTTTTGGGAGACATGGGGGTGTAGAAGAGCTCATGGGTGAAATGGATAGTGCAGCTGCATTGTATTCAAAAGCTGTGCAACTATTGGTGTTTCTTCTAGTGGAAGCTCCATCCCTCATTCTAAATCCTCCATTTACACTGACTAACACGGATCGATACAGGCTTCGGACTTATATCGATCTTCTAAACAACAGGCAAGGCTATTCCAGGTCTCAGCGAATGGCGCTGCTGAAATGTGACGAAGCCCAAGGCAGGCTTAAGAACAAGTTTTAG	2187	0.4339	MAQWSGRSGLVGDYIVGKQIGSGSFSVVWHGRHRVHGTEVAIKEIATGRLNKKLQESLMSEIFILKQINHPNIIHLHDIIEVPGKIHLVLEYCRGGDLSMYIQRQGRVQEGTAKHFMQQLATGLQVLRDNNLIHRDLKPQNLLLTRNDDKSVLKIADFGFARSLQPRGLAETMCGSPLYMAPEIMQQQKYDAKADLWSVGTILFQLVTGRTPFTGNSQPQLLQNIMKSTELPFPSDNQSLSSECKDLCQKLLRRSPVERLTFEEFFNHPFLCQKQPEQDRSLRRASSSRMVGEICSTEPNPFRRNKENHQEDCLPFFLDDDTRGPEGSPSFPRKKSSIKSTYGFDLTTQQDRAGAAFASSTNVNFTPRQQPEKSAIRLEGLRTSASNLADPLGSLEQRLANTSSRVADSLENIDQDYVLVSGPPMDVSSSSVSASKPSHFPYRSGASLQESSNLIDRVSSPMPIIGAATSSTYQIGSSESQDSGPGTSPASMDTGDEQPSADCMTRIKSLQQCASAITELVHEKIEARKQLEAFSIQLVILAIWKQALHICHAQAASAMEGSPSQETTRCRRSTNMKHGSSDSEECLDGNVQGPKDILSQIESEFLREIELAEEFAKAVEPANTEMPDAMETIFQSALAFGRHGGVEELMGEMDSAAALYSKAVQLLVFLLVEAPSLILNPPFTLTNTDRYRLRTYIDLLNNRQGYSRSQRMALLKCDEAQGRLKNKF	728

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi11g0109	728	CDD	STKc_ATG1_ULK_like	20	270	-	-
	Mibi11g0109	728	SMART	serkin_6	14	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi11g0109	728	Pfam	Protein kinase domain	15	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi11g0109	728	PANTHER	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	6	637	IPR045269	GO:0004674\|GO:0006914
	Mibi11g0109	728	ProSitePatterns	Protein kinases ATP-binding region signature.	20	43	IPR017441	GO:0005524
	Mibi11g0109	728	Gene3D	Transferase(Phosphotransferase) domain 1	7	316	-	-
	Mibi11g0109	728	FunFam	Serine/threonine-protein kinase ATG1	6	312	-	-
	Mibi11g0109	728	SUPERFAMILY	Protein kinase-like (PK-like)	11	272	IPR011009	-
	Mibi11g0109	728	FunFam	Aurora kinase A	7	96	-	-
	Mibi11g0109	728	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	132	144	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi11g0109	Mibi-ChrMibi11	1425473	1433138	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi11g0109	10	273	CBL-interacting serine-threonine protein kinases	AT2G30360	35.556	1.42e-51	184

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-3	Mibi11g0109		Pkinase	1.2e-72	CL0016

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