Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0072 ATGGCTTCAATTGGATCCTCCTATTGGTGCTACAGATGCAATCAGTTTGTTAGGGTTCGAATAATTGGGGCTGAAGAAGAAACCATACTTTGCCCTGATTGTGGTTCTGGTTTCATAGAAGAAATCAGGACACGTAATCACTCTCCTTTCAATCGATTCCCTTCACCATCATCCATATACGCCGACGATGAATCCATCTCGGAGCAAGCCAGCCCCAGAATCCGACGTGGAACAAGGAACGCAGGCGATCGTTCCCCTTTTAACCCTGTAATCGTCCTCAGTGGTGGGGCCACCGATGGTGGTGCAAATGGAAATGAAGGCGTTGGTATTGAAAGAGGGAACTTTGAGCTTTATTACAATGAAGGTACTGGTTCTGGTCTTCGCCCTTTACCTGCTAGTGTTACTGAGTTTTTGATGGGTGCTGGGTTTGACCACCTTCTTGATCAGTTGACTCATTTAGAGGTCACTGGAATTGGGAGATTACATCAAACTCCGGCTTCGAAATCTGCAATTGAATCGATGCCTATTGTTAAGATTGTTTCCACACATGTTTCTGCGGAATCACATTGTGCTGTTTGTAAGGAACAATTTGAGATTGATTCTGATGCTCGTGAGATGCCTTGTAAGCATATTTACCATTCTGATTGTATACTTCCATGGCTTTCGATTCGTAATTCGTGTCCTGTCTGTCGCCATGAGTTGCCTACTGAGATGCGTGGGAGTAGTAGTGGTAGGAGTTCCCCTGTGGATGATGGTGGGAGGGATGATCATACTGTGGGGTTGACTATATGGAGATTGCCTGGTGGTGGTTTTGCTGTGGGAAGGTTCACTGGTGGGAGAAGGGCTGCTGAGCGTGAACTTCCTGTTGTATATACAGAAATGGATGGTGGATTCAATAGTGTCGGGGTTCCAAGGAGGATATCTTGGGAAACTAGTGTGAGGAGATCAAGGGGGGAGTCTCGGGGATTAGGTAGCGCTTTTCGGAATTTCTTCTCGAATTTCGGGTGGCTTAGGACTTCCTTCTCTCGTTCTTCCAGGACTGATTCTAATGAGAGCCGAAGGACAAGATCTAATTCATTATTATCTAGATTCTCAAGAAGGCGCAACTAG 1110 0.4595 MASIGSSYWCYRCNQFVRVRIIGAEEETILCPDCGSGFIEEIRTRNHSPFNRFPSPSSIYADDESISEQASPRIRRGTRNAGDRSPFNPVIVLSGGATDGGANGNEGVGIERGNFELYYNEGTGSGLRPLPASVTEFLMGAGFDHLLDQLTHLEVTGIGRLHQTPASKSAIESMPIVKIVSTHVSAESHCAVCKEQFEIDSDAREMPCKHIYHSDCILPWLSIRNSCPVCRHELPTEMRGSSSGRSSPVDDGGRDDHTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGGFNSVGVPRRISWETSVRRSRGESRGLGSAFRNFFSNFGWLRTSFSRSSRTDSNESRRTRSNSLLSRFSRRRN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0072 369 MobiDBLite consensus disorder prediction 53 82 - -
Mibi11g0072 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 76 235 - -
Mibi11g0072 369 FunFam E3 ubiquitin-protein ligase RING1-like 152 237 - -
Mibi11g0072 369 MobiDBLite consensus disorder prediction 234 254 - -
Mibi11g0072 369 Pfam zinc-ribbon 7 42 IPR039525 GO:0061630
Mibi11g0072 369 MobiDBLite consensus disorder prediction 343 369 - -
Mibi11g0072 369 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Mibi11g0072 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 237 IPR013083 -
Mibi11g0072 369 Pfam Ring finger domain 189 231 IPR001841 -
Mibi11g0072 369 SMART ring_2 190 230 IPR001841 -
Mibi11g0072 369 CDD RING-H2_RNF126_like 190 231 - -
Mibi11g0072 369 Pfam Protein of unknown function (DUF1117) 259 365 IPR010543 -
Mibi11g0072 369 SUPERFAMILY RING/U-box 170 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0072 Mibi-ChrMibi11 948655 949764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0072 129 245 C3H Transcription Factor Family AT5G01980 42.735 2.74e-26 107