LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi11g0054	ATGGGTGCGTGCTGGAGCAATCGGATCAAGGCCGTGACTCCTTCAAGTACAGGATTTACATCAAGAAGTGTGAGCAGGGATGGCTGTGACACGAGCTCAAACAGCAGGAACTCATCGTCCTCCATACCCATAACTCCTAGGAGTGAGGGCGAGATCTTGCAATCTTCTAATTTGAAGAGCTTCACCTATAGTGAACTTAGAACATCCACAAAAAATTTTCGCCCTGATAGCATCTTAGGAGAGGGCGGATTTGGTTCAGTTTTTAAGGGGTGGATTGATGAGCACACCCTTGCTGCCACCAAGCCAGGGACTGGCATTGTTATTGCTGTGAAGAGACTTAACCAAGATGGTTTCCAGGGTCACAAGGAATGGCTGGCTGAAATCAACTACCTCGGTCGACTGCATCATCCTAATCTTGTTAAACTCATAGGGTATTGCTTGGAGGATGAGCATAGACTTCTAGCCTATGAATTTATGTCTAGGGGCAGTGTGGAGAATCATCTGTTCAGAAGGGGATCTCATTTTCAGCCACTCTCTTGGTCTTTGAGAATGAAAATAGCCCTTGGGGCTGCTAAGGGTCTTGCATTTCTTCATAGCGCAAAACCTAAAGTCATATACCGTGACTTCAAGACTTCTAATATTCTTCTTGATACAGATTATAATGCCAAACTTTCTGACTTTGGGTTGGCCAGAGATGGGCCAACAGGTGACAAGAGTCATGTATCAACTAGGGTCATGGGTACTCACGGATATGCAGCGCCAGAATATCTTGCAACAGGCCACCTCACCACCAAGAGTGATGTATACAGTTTTGGTGTAGTTCTTCTGGAAATGTTATCAGCAAGACGAGCCATAGACAAAAACCGGCCAACCGGAGAACATAACCTTGTAGAGTGGGCAAAACCTTATCTATCTAATAAACGAAGGTCTTTTCGCGTCATCGACGCCCGTCTTCAAGGTCAGTACTCGCTGAGCCGAGCTCAAAGGGCGGCAACCCTTGCTTTTCAGTGTCTTTCAGCAGAACCTAAATTTAGGCCAAGCATGGAGGAGGTAGTAATAGCATTGGAGCAGCTTCAAGAATCGAAGAACATGGCAAAAAGTGCTAATAAAAAAGAGCACCGAGTACAAAGTACAAGTGTTAGTCATGATCATCCAAAGGGCTTACCGGCATCCATGAGAAACCGTGCTGGAGCTGCACCTGCACCTGCACCTGCACCGGCTAATGCTGCATATCCCAGGCCATCTGCCTCGCCCCTTTTTGCTTAA	1266	0.4652	MGACWSNRIKAVTPSSTGFTSRSVSRDGCDTSSNSRNSSSSIPITPRSEGEILQSSNLKSFTYSELRTSTKNFRPDSILGEGGFGSVFKGWIDEHTLAATKPGTGIVIAVKRLNQDGFQGHKEWLAEINYLGRLHHPNLVKLIGYCLEDEHRLLAYEFMSRGSVENHLFRRGSHFQPLSWSLRMKIALGAAKGLAFLHSAKPKVIYRDFKTSNILLDTDYNAKLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSARRAIDKNRPTGEHNLVEWAKPYLSNKRRSFRVIDARLQGQYSLSRAQRAATLAFQCLSAEPKFRPSMEEVVIALEQLQESKNMAKSANKKEHRVQSTSVSHDHPKGLPASMRNRAGAAPAPAPAPANAAYPRPSASPLFA	421

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi11g0054	421	MobiDBLite	consensus disorder prediction	365	380	-	-
	Mibi11g0054	421	ProSiteProfiles	Protein kinase domain profile.	73	358	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi11g0054	421	CDD	STKc_IRAK	79	358	-	-
	Mibi11g0054	421	FunFam	Serine/threonine-protein kinase BIK1	39	158	-	-
	Mibi11g0054	421	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	204	216	IPR008271	GO:0004672\|GO:0006468
	Mibi11g0054	421	MobiDBLite	consensus disorder prediction	13	49	-	-
	Mibi11g0054	421	MobiDBLite	consensus disorder prediction	363	421	-	-
	Mibi11g0054	421	Gene3D	Transferase(Phosphotransferase) domain 1	159	384	-	-
	Mibi11g0054	421	SUPERFAMILY	Protein kinase-like (PK-like)	38	352	IPR011009	-
	Mibi11g0054	421	FunFam	Probable serine/threonine-protein kinase PBL8	159	374	-	-
	Mibi11g0054	421	PANTHER	OS01G0588500 PROTEIN-RELATED	34	359	-	-
	Mibi11g0054	421	Gene3D	Phosphorylase Kinase; domain 1	48	158	-	-
	Mibi11g0054	421	ProSitePatterns	Protein kinases ATP-binding region signature.	79	111	IPR017441	GO:0005524
	Mibi11g0054	421	Pfam	Protein kinase domain	76	352	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi11g0054	Mibi-ChrMibi11	704612	707289	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi11g0054	51	355	Glycoside Hydrolase	AT3G07070	51.634	1.34e-109	327

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Mibi11g0054		Pkinase	6.6e-45	CL0016