Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0035 ATGCCAAGGCCGAGGCTGTTCTTGAGCATCCACAAGAATCACCACCAAATGCCGAGGCAGAAATCTTTCTCACTTCTTCTTCTTCTCTTCTTCAACCTTCTTTTCCTGCTTCTTCCTCATCTTTCTTCTTCTTCCTCAAACAATGAAGCTCAAGTTCTTCTTTCATGGCTCCACACTTCCTCTGCTCCTCCTCCTTCTTTCCTCGGTTGGAACCCTTCAAGCCCCAACCCTTGTAACTGGTCTTTCATCAAATGCTCTTCACAGAACTTTGTCACTGAGATAAACATTCAAGCAACTGAACTAGCTCTTCCTTTTCCTCCCAACATTTCAGCTTTTCCATTTCTTCAAAAACTTATCATCTCAGGGGCTAATCTTTCTGGGTTTATCTCACCTGATATTGGAAACTGCCCTGACCTTATAACCATTGATCTTAGCTCAAATAATCTTGCTGGTACAATTCCTCCCACCATCGGCAAGCTAAAAAACCTCCAAAATTTGAGCTTGAACTCTAACCAGCTTTCTGGGGAAATCCCCAAAGAGATTGGTGATTGTGTTAGTCTGAGGAACCTTGATATTTACGATAACAATCTTAGTGGAGTTCTTCCTTCTGAGTTGGGAAAGCTTTCAAATCTGGAGGCAATAAGAGCCGGAGGAAACAATGGCATTGTGGGGAAGATTCCTGACGCTCTTGGGGACTGCAGGAATTTGACTATATTAGGTCTGGCTGATACTAAAATCTCTGGTTCATTACCTGCTTCTGTAGGTAAGTTAACGTTGCTTCAAACAATTTCTATTTATAACACTATGTTGTCTGGTGAGATTCCTCCTGAAATAGGAAACTGCTCTGAGCTTGTGAACTTGTTTCTGTATGAGAATGAGCTATTTGGCTCATTACCAAAAGAGCTGGGTAATCTTCATAAGCTTCAGAAAATGTTGCTGTGGCAGAATAAGTTTGCTGGAAGCATCCCTCAGGAAATTGGTAACTGTGGAAACTTGAAGATTCTTGATGTTTCTTTAAACTCTTTGTCTGGAACTATACCTAATACTTTCGGAAACCTCTCAAATCTTGAAGAACTCATGTTAAGTAACAATAACATATCTGGTTCAATCCCGCCTGTTCTTTCCAATCTTTCGGACCTCATACAGCTTCAGGTGGATACTAATCAAATATCAGGTTCAATTCCGGCTGAACTTGGAAAGTTGAAGAAGCTTACTGTCCTTTTTGCTTGGCAAAATAAACTTGAAGGAAGCATCCCTTCTGAATTGGGTGGTTGTGCCAGCCTAGAAGCTCTTGATTTGTCATATAATGCACTCACTGATAGCTTACCTCCAAGCTTATTTCAGTTTCAAAATTTGACAAAGCTTCTGCTAATCTCTAACCATATTTCTGGTCCTATACCCCAGGAAATTGGTAATTGCAGTTCTCTCATTCGGCTCAGGCTTCTGAACAACCAAATTGATGGAGAGATTCCAAGAGAACTTGGTTTTCTCAATAACTTAAACTTTCTTGATCTGTCAGAAAACAATCTTACTGGTTTAGTGCCAGTTGAGCTAGGACATTGCAAAGGTCTTCAAATGCTGAACCTAAGCAATAACTCCCTTTCTGGTGCTTTACCTAGTTCTTTATCTTTGCTCACAAGGCTTGAGGTTTTAGATGTTTCTCTGAATCACTTTTCTGGTGAAGTTCCTTCAAGTATAGGCCAACTCACTTCACTTAGTAGGCTTATCCTTTGCAGAAACTCATTCTCTGGATCAATACCCTCATCACTAGGCCTTTGTTCAAGTCTTCAACTACTGGATCTCAGCAGCAACAATTTCTCAGGAAGCATCCCATCAGAATTATTTGATATAGAAGCACTTGACATTGCTCTAAATTTGAGTCACAATGCATTATCTGGAGCAATCCCACCACAGGTTTCTTCTCTAAACAGGCTTTCTGCTCTAGACATTTCCCACAACAAGCTTGAAGGAGATTTGGTGGCACTTTCAGGACTTGAGAATCTTGTTTCTCTCAACATCTCCTTCAACACGTTCACTGGCTATCTTCCAGACATCAAGTTATTCCACCAACTGTCACCAACAGATTTGGAAGGAAATCAAGGTTTGTGTCCAAGTGGCCGAGATTCATGCTTCATTAGCAATTATGCAATGACAAAAACGAAAAATAATAGTGATTCTAAGAGGTCTGAGAGAATCAAATTGGGCATAGGATTGCTTAGTGCCTTCACCATTGCAATGACAATCTTTGGGATTCTTACAATGCTTCGAGCAAAGAAAATGGCTCAGGATGACAATGATTCTGAGATGGGAGGTGATTCATGGCCTTGGCATTTCACACCATTTCAAAAATTAAACTTCTCCATCGATCAAGTCCTAAAATGCTTGGTTGACTCTAATGTGATAGGAAAGGGATGTTCTGGGGTCGTTTACCGTGCAGAACTAGAAAATGGTGATGTCATCGCTGTGAAAAAACTATGGCCAACAACAATGGCTGCTAGATATGATTGCCAAAATGACAAGGTAGCAGTTCATGGAGGAGGAGTTCGAGATTCCTTCTCGGCTGAGGTTAAAACACTGGGTTCCATTCGACACAAGAACATTGTGAGGTTCCTTGGCTGCTGTTGGAATCGAAATACTAGGCTGCTTATGTATGACTACATGCCAAATGGGAGCCTAGGAAGTTTGCTGCATGAACGAAGTGGTGGAAACTGCTTGGAGTGGGACATCAGGTATCGGATATTGCTGGGAGCAGCTCAAGGCTTGGCTTATCTTCACAATGACTGTGTTCCTCCCATTGTTCATAGGGACATCAAGGCCAACAATATCCTCATAGGTCCTGATTTTGAGCCATACATTGCTGATTTTGGGCTTGCTAAACTTGTTGATGATGGAGATTTTGCAAGATCCTCTAGCACACTGGCTGGTTCCTATGGCTACATCGCTCCTGAGTATGGATATATGATGAAGATAACAGAGAAAAGTGATGTGTATAGTTATGGGATTGTTGTCTTAGAAGTGCTAACAGGGAAGCAACCAATTGACCCGACAATACCAGATGGGCTCCACATAGTTGACTGGGTCAGACGGAAAAGAGAAGGGAGTGAAGTGCTGGACCCAGGCCTATGTGCAAGGCCTGAACCTGAAATAGAAGAAATATTACAGACTTTGGGGGTGGCTCTGTTGTGTGTGAACCCTAGCCCAGAAGATAGGCCAACCATGAAGGATGTTGCTGCAATGCTTAAAGAGATCAGGCAAGAAAGGGAGGAATATATGAAAGTTGATGTGCTTCTTCACGGATCATGTGCAAATGAAGAAGATAATAATAATACTAATAATCAGTCAAGTGAAGAGGCAAAAGGGAATACGATGAAGCAGTCATACCCAGTAAACAGCAACAACACTAGTTTTTCTGCCTCTCTTCTTGTCTCTCCTTCATCCTCCAATTCCAAAGTCACATTCAAATAG 3465 0.4165 MPRPRLFLSIHKNHHQMPRQKSFSLLLLLFFNLLFLLLPHLSSSSSNNEAQVLLSWLHTSSAPPPSFLGWNPSSPNPCNWSFIKCSSQNFVTEINIQATELALPFPPNISAFPFLQKLIISGANLSGFISPDIGNCPDLITIDLSSNNLAGTIPPTIGKLKNLQNLSLNSNQLSGEIPKEIGDCVSLRNLDIYDNNLSGVLPSELGKLSNLEAIRAGGNNGIVGKIPDALGDCRNLTILGLADTKISGSLPASVGKLTLLQTISIYNTMLSGEIPPEIGNCSELVNLFLYENELFGSLPKELGNLHKLQKMLLWQNKFAGSIPQEIGNCGNLKILDVSLNSLSGTIPNTFGNLSNLEELMLSNNNISGSIPPVLSNLSDLIQLQVDTNQISGSIPAELGKLKKLTVLFAWQNKLEGSIPSELGGCASLEALDLSYNALTDSLPPSLFQFQNLTKLLLISNHISGPIPQEIGNCSSLIRLRLLNNQIDGEIPRELGFLNNLNFLDLSENNLTGLVPVELGHCKGLQMLNLSNNSLSGALPSSLSLLTRLEVLDVSLNHFSGEVPSSIGQLTSLSRLILCRNSFSGSIPSSLGLCSSLQLLDLSSNNFSGSIPSELFDIEALDIALNLSHNALSGAIPPQVSSLNRLSALDISHNKLEGDLVALSGLENLVSLNISFNTFTGYLPDIKLFHQLSPTDLEGNQGLCPSGRDSCFISNYAMTKTKNNSDSKRSERIKLGIGLLSAFTIAMTIFGILTMLRAKKMAQDDNDSEMGGDSWPWHFTPFQKLNFSIDQVLKCLVDSNVIGKGCSGVVYRAELENGDVIAVKKLWPTTMAARYDCQNDKVAVHGGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGGNCLEWDIRYRILLGAAQGLAYLHNDCVPPIVHRDIKANNILIGPDFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRRKREGSEVLDPGLCARPEPEIEEILQTLGVALLCVNPSPEDRPTMKDVAAMLKEIRQEREEYMKVDVLLHGSCANEEDNNNTNNQSSEEAKGNTMKQSYPVNSNNTSFSASLLVSPSSSNSKVTFK 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0035 1154 ProSiteProfiles Leucine-rich repeat profile. 355 378 IPR001611 GO:0005515
Mibi11g0035 1154 PRINTS Leucine-rich repeat signature 642 655 - -
Mibi11g0035 1154 PRINTS Leucine-rich repeat signature 500 513 - -
Mibi11g0035 1154 SUPERFAMILY RNI-like 120 463 - -
Mibi11g0035 1154 Gene3D Ribonuclease Inhibitor 324 404 IPR032675 -
Mibi11g0035 1154 MobiDBLite consensus disorder prediction 1102 1154 - -
Mibi11g0035 1154 Pfam Leucine rich repeat N-terminal domain 47 86 IPR013210 -
Mibi11g0035 1154 MobiDBLite consensus disorder prediction 1101 1154 - -
Mibi11g0035 1154 SMART serkin_6 795 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g0035 1154 Gene3D Phosphorylase Kinase; domain 1 780 886 - -
Mibi11g0035 1154 SUPERFAMILY RNI-like 370 700 - -
Mibi11g0035 1154 Coils Coil 1073 1093 - -
Mibi11g0035 1154 SMART LRR_typ_2 426 449 IPR003591 -
Mibi11g0035 1154 SMART LRR_typ_2 401 425 IPR003591 -
Mibi11g0035 1154 SMART LRR_typ_2 545 569 IPR003591 -
Mibi11g0035 1154 SMART LRR_typ_2 593 617 IPR003591 -
Mibi11g0035 1154 SMART LRR_typ_2 353 377 IPR003591 -
Mibi11g0035 1154 SMART LRR_typ_2 305 329 IPR003591 -
Mibi11g0035 1154 SMART LRR_typ_2 497 520 IPR003591 -
Mibi11g0035 1154 SMART LRR_typ_2 160 184 IPR003591 -
Mibi11g0035 1154 ProSiteProfiles Protein kinase domain profile. 795 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g0035 1154 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 427 714 - -
Mibi11g0035 1154 SMART LRR_sd22_2 160 175 - -
Mibi11g0035 1154 SMART LRR_sd22_2 401 433 - -
Mibi11g0035 1154 SMART LRR_sd22_2 184 213 - -
Mibi11g0035 1154 SMART LRR_sd22_2 497 518 - -
Mibi11g0035 1154 SMART LRR_sd22_2 353 379 - -
Mibi11g0035 1154 SMART LRR_sd22_2 281 307 - -
Mibi11g0035 1154 SMART LRR_sd22_2 642 667 - -
Mibi11g0035 1154 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 778 886 - -
Mibi11g0035 1154 Gene3D Ribonuclease Inhibitor 202 323 IPR032675 -
Mibi11g0035 1154 Gene3D Ribonuclease Inhibitor 45 201 IPR032675 -
Mibi11g0035 1154 FunFam Predicted protein 202 300 - -
Mibi11g0035 1154 CDD STKc_IRAK 801 1083 - -
Mibi11g0035 1154 Gene3D Transferase(Phosphotransferase) domain 1 887 1102 - -
Mibi11g0035 1154 FunFam Nuclear pore complex protein NUP107 46 201 - -
Mibi11g0035 1154 Pfam Leucine rich repeat 331 390 IPR001611 GO:0005515
Mibi11g0035 1154 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 301 409 - -
Mibi11g0035 1154 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 483 1085 - -
Mibi11g0035 1154 ProSitePatterns Protein kinases ATP-binding region signature. 801 824 IPR017441 GO:0005524
Mibi11g0035 1154 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Mibi11g0035 1154 SUPERFAMILY Protein kinase-like (PK-like) 781 1080 IPR011009 -
Mibi11g0035 1154 Pfam Protein kinase domain 798 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi11g0035 1154 Gene3D Ribonuclease Inhibitor 405 713 IPR032675 -
Mibi11g0035 1154 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 887 1098 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0035 Mibi-ChrMibi11 439692 443511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0035 45 1101 Receptor kinase-like Gene Family AT5G56040 47.201 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mibi11g0035 Pkinase 4.3e-38 CL0016