Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi11g0031 ATGGAAGATAAGGGAGAAGTAGTCCGCAAGGTGGTTGGAGGAGGAGGAGGAGAAGAATGCAGGGTTTTCCAATGTCAGTTCTGTTCAAGAAAGTTTTATAGCTCTCAAGCTCTGGGAGGACACCAAAATGCCCACAAAAAAGAGAGAACGGCAGCAAGAAAGGCTAAAAGGGCAGCATTTGAGTATTCATCTTCTGCTTCTTTAGCCTCTTCTCTTGCGTCTCCAATATCGCCTTTTGGAGCTTCCACCCATCAAATGGCTCTTCTCAATCCTTCCATGTTCCTCGCTTCTCATGCTGCAAATCTTGGTTACGTCCAAGCCCACCACCAGATTTTTGAGCACTTTGGAGCAAACTTTGGGCCTGGGAATGCTCTGTTTTGTGAAGATGTTGTTGAGGAGAATTTGCGCAGCAACATGTCATTGACAAGAAGCGACTATCAAGGCATTTGCATAATGAATCATTGTAAAGAGAAAGATCAAAATCTTGATTTGACTCTTCATCTATAG 507 0.4379 MEDKGEVVRKVVGGGGGEECRVFQCQFCSRKFYSSQALGGHQNAHKKERTAARKAKRAAFEYSSSASLASSLASPISPFGASTHQMALLNPSMFLASHAANLGYVQAHHQIFEHFGANFGPGNALFCEDVVEENLRSNMSLTRSDYQGICIMNHCKEKDQNLDLTLHL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi11g0031 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Mibi11g0031 168 Gene3D Classic Zinc Finger 10 74 - -
Mibi11g0031 168 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Mibi11g0031 168 PANTHER ZINC FINGER PROTEIN JAGGED 19 125 IPR045320 GO:0003700
Mibi11g0031 168 SUPERFAMILY beta-beta-alpha zinc fingers 21 50 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi11g0031 Mibi-ChrMibi11 398704 399210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi11g0031 18 77 C2H2 Transcription Factor Family AT5G57520 55.000 5.69e-15 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi11g0031 None None None