Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g2018 ATGATTGGTATCCAGAATTCCTTCTACTCTCCCTTGTACTTTGATGCTCTTTTGGTCATATTTTGTGTTTCGACATGTATTTCTGTGGAAATTTGAAAGAGGGAGCCTGAAGATGAACCTGTGAAGCAAGTGACTGCAAAGAAGCAGAAGACAGACTGGGTTGCTGAAAATCAAAAGAACGAAAGCAATTCAGATGATTTCTTCTCATATTCTAGAAACGCAGATGAAGATTCTGGTTTGAATTATGTGAGTAAGAGTGAACTCGGTGCTGTAAAGAGGGAGGGCGAATCAAGGTCAGATACAGGGAGTGGCTCCGTTGACAAAGATGATAAAAAAACAGAGCCAGCCATATTGCCGGAGGAATTACCTGATGCTGGTAAGAAAGAGCCTGCTAAGAAAGTTGATTCAAGTAAAGCCTCAGGTGACAGCAGGACTGATGAGGATATGGACAACGTAGCCACATCATCAAAGAAGTTGCTTGCTACATCTGCTACAGTTAATAATATATCTACTAAGAAGGTTGAGTCAAGCAATGACTCATGCCATGATAGTGGCTTAGATGAGGATGATGTGGTCCGGAAAACACATGTGACATCATCACCCAGAAAGCTGCTTACTTCTCCAGTTGCTCAAGGGGAGGGTATTGAGAAAAATGACAACTCCTATGATGGATCAAGAGAAGGATTTGATGAATGCAATATGAAAGATGATAAAACAGTTGATACTACCTCAACAGGGGCAACTATAAAGCCTACAATGCCAGCTACCTCAAAAGAACAAAATGCCACATCAAAGATGCTTTTTGTTGGAAACTTGTCCTATAGTGTGGAAAGGGATGATTTGGAAAATTTATTTAAAGACTGTGGAGAAATTGTCGATATTCGATTTGCTACAGATCGCGAAGGGAGGTTTAAAGGCTTCGCATATGTTTTGTTTGCCACAGAAGAAGCAGCACAAATTGTAAGCATTTGTGATGGAAAATGGGAAATCTGTTGTAGGATTATGAAATCTTAA 1014 0.4014 MIGIQNSFYSPLYFDALLVIFCVSTCISVEIXKREPEDEPVKQVTAKKQKTDWVAENQKNESNSDDFFSYSRNADEDSGLNYVSKSELGAVKREGESRSDTGSGSVDKDDKKTEPAILPEELPDAGKKEPAKKVDSSKASGDSRTDEDMDNVATSSKKLLATSATVNNISTKKVESSNDSCHDSGLDEDDVVRKTHVTSSPRKLLTSPVAQGEGIEKNDNSYDGSREGFDECNMKDDKTVDTTSTGATIKPTMPATSKEQNATSKMLFVGNLSYSVERDDLENLFKDCGEIVDIRFATDREGRFKGFAYVLFATEEAAQIVSICDGKWEICCRIMKS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g2018 337 MobiDBLite consensus disorder prediction 79 156 - -
Mibi10g2018 337 MobiDBLite consensus disorder prediction 207 254 - -
Mibi10g2018 337 MobiDBLite consensus disorder prediction 239 254 - -
Mibi10g2018 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 319 IPR000504 GO:0003723
Mibi10g2018 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 319 IPR000504 GO:0003723
Mibi10g2018 337 MobiDBLite consensus disorder prediction 52 71 - -
Mibi10g2018 337 MobiDBLite consensus disorder prediction 89 153 - -
Mibi10g2018 337 SMART rrm1_1 266 335 IPR000504 GO:0003723
Mibi10g2018 337 Gene3D - 210 328 IPR012677 -
Mibi10g2018 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 37 319 - -
Mibi10g2018 337 MobiDBLite consensus disorder prediction 56 71 - -
Mibi10g2018 337 MobiDBLite consensus disorder prediction 219 238 - -
Mibi10g2018 337 SUPERFAMILY RNA-binding domain, RBD 245 321 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g2018 Mibi-ChrMibi10 43358483 43362520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g2018 267 319 Eukaryotic Initiation Factors Gene Family AT2G23350 43.396 1.95e-06 47.8