Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1995 ATGTGGCCTGATTTCCGACTCACGAAGAGACCCAAAGCCGAGGAAAAGAGACCCAGAGTTGGATGGTTCAGATTGATTGGGGCGTCCCCGTATCGACGGTGGAATTCAATCGGAGAGGCCAAACTTGTGGTATATATATTTGACAAGAAAAGTTTCACTTCACATTTTCCCATTCGATCTTCTTGGTTTCGTTCTTTGGTTGCCATTTGCCAAGCCATGGAGAATAATCACACCGCCAACAACAACAACAACAACAACACCTCCAAAGCAGCCAAAGCCATGATGAATGAGAGCGAAGAGCGTTCCAACTTGAATGAACAGGAACACATAGAAGAAGTGGTTGTTGTTGATGAGAATAATGAAGAAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGGGAGAGAACAAGTGGATCTGCCTCCGTCCCTTCCAGAACCCCTTTCACTAATCTCAGTCAGGTCGATGCTGACCTCGCCCTCGCTCGAACCCTCCAGGAGCAGGAAAGGGCATACATGATGCTGAGAATGAACAACGAAGGAAGTGATTATGGAAGTTGGGAAGCTGGCAGCTATTTGCATGACGATGGGGATGATTTTGAAGATCTACATGACGGTACTGACGATGATGAAGACAATGACCTTGATAATGAAGATGACGATGATGAAAATGATGATGAAGAAGAAGACGAGTTTGATGATGATGAAGATGCGTTCGATGCCCATGCTCATGTTAGTTCTGGTGAAATCGATAATACCCGCATTGAATTTGACCCTGATGTATTCTCAAGTGATGAAGCCTATGCAAGAGCATTACAAGAGGCTGAAGAGAGAGATATGGCAGCTAGGCTATTAGCTTTGGCTGGGTTAAATGATCGGGAAGCTGAGGATTCAGAAGACCAAGGTGCTAATTCTCAGGATGCATGGGAGGATGTTGATCCTGATGAACTTTCATATGAGGAACTTCTGGCATTGGGTGAAGTTGTTGGAACTGAGAGTAGAGGTCTTTCTACTGATACTCTTGCTTCTTTGCCGTCGGTCAACTTCAAGATGGGAAGTGATCAGCATGGAAGTAACGATTCATGTGTCATATGCCGGGTGGATTATGAGGATGGTGAATCCTTGACTGCACTTGCATGCAAACATTTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTGCTGAGGTGACAGCTTCTGGGAGCAACTTGTAG 1236 0.4506 MWPDFRLTKRPKAEEKRPRVGWFRLIGASPYRRWNSIGEAKLVVYIFDKKSFTSHFPIRSSWFRSLVAICQAMENNHTANNNNNNNTSKAAKAMMNESEERSNLNEQEHIEEVVVVDENNEEEGEGEGEGEGERTSGSASVPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEAGSYLHDDGDDFEDLHDGTDDDEDNDLDNEDDDDENDDEEEDEFDDDEDAFDAHAHVSSGEIDNTRIEFDPDVFSSDEAYARALQEAEERDMAARLLALAGLNDREAEDSEDQGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLASLPSVNFKMGSDQHGSNDSCVICRVDYEDGESLTALACKHLYHPECINNWLKINKVCPVCSAEVTASGSNL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1995 411 MobiDBLite consensus disorder prediction 199 235 - -
Mibi10g1995 411 MobiDBLite consensus disorder prediction 116 149 - -
Mibi10g1995 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 407 IPR013083 -
Mibi10g1995 411 Pfam Ring finger domain 358 400 IPR001841 -
Mibi10g1995 411 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Mibi10g1995 411 MobiDBLite consensus disorder prediction 186 235 - -
Mibi10g1995 411 FunFam E3 ubiquitin ligase BIG BROTHER-related 326 407 - -
Mibi10g1995 411 SUPERFAMILY RING/U-box 351 406 - -
Mibi10g1995 411 MobiDBLite consensus disorder prediction 290 312 - -
Mibi10g1995 411 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 97 409 IPR043312 -
Mibi10g1995 411 SMART ring_2 360 400 IPR001841 -
Mibi10g1995 411 CDD RING-H2_PA-TM-RING 360 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1995 Mibi-ChrMibi10 43143652 43148261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1995 143 304 C3H Transcription Factor Family AT3G19910 52.147 1.24e-35 129