Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1992 ATGTCTTCCTCCGGTGGAATCGATCAAGACGGCGGAACAAAACCTTTCTTCTGCTACAAATGCGATCGCAGAGTCAACATTCCCGCCTCCGATTCCTCCGACCCTTTCTGCCCATTCTGCTTGCAAGGCTTTCTTGAAGAGGTCGAAAACCCTAACCCTAACCCTTTCGCAGACCCCGACTCCTCTTTCGGATTCGATCCCTTATCCTTCCTCCCCCTTCTCTTGTCCACCGCCTCTCGCACCAGGCTTCGACAAGATTCCGTCGATGCCGACATTTTCGACCCCGTTCATTTCCTCCAGAACCACCTTCGAGATCTACAGGCCGATGGCGCCAACGTCCAATTCGAGATCAATCACCCTTCCGAACAAGCTTTCCGCCTTCCCACTAACATTGGCGACTACTTTCTTGGCCCTGGCCTCGAGCAATTGATTCAGCAGCTCGCGGAGAACGACCCTAATCGTTATGGCACCCCACCTGCCTCGAAATCTGCTGTCCAGAATCTTCCGACTGTTACTGTCACCGATGAATTGTTGAAATCGGAGTTGAACCAGTGCGCGGTATGTCAGGATGAGTTCGAGAAGGGTATCCAGGTAAAGCAAATGCCTTGCAAGCATGTGTATCATGATCAGTGCCTGCTTCCTTGGCTCGAATTGCATAACTCTTGCCCTGTATGTCGATATGAGCTGCCCACCGATGACCCTGATTATGAGAATCCAGCCCACAGGGCACAGGGAAATGCTAATGCTGGGTGGAGATCTGTTGGCAGTACCAGCGGCGGAGGAGGGGGTAGCAGACCCGTTCAGAGGACTTTTAGGATATCATTGCGGTATCCATTTGGCTCACGTGAGTCCACTCACGAGAGCAGCGAACGAGGATTGGGTAATTTGCCAGAAGATTTGGACTGA 906 0.5221 MSSSGGIDQDGGTKPFFCYKCDRRVNIPASDSSDPFCPFCLQGFLEEVENPNPNPFADPDSSFGFDPLSFLPLLLSTASRTRLRQDSVDADIFDPVHFLQNHLRDLQADGANVQFEINHPSEQAFRLPTNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKSAVQNLPTVTVTDELLKSELNQCAVCQDEFEKGIQVKQMPCKHVYHDQCLLPWLELHNSCPVCRYELPTDDPDYENPAHRAQGNANAGWRSVGSTSGGGGGSRPVQRTFRISLRYPFGSRESTHESSERGLGNLPEDLD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1992 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 232 IPR013083 -
Mibi10g1992 301 SMART ring_2 185 225 IPR001841 -
Mibi10g1992 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 230 - -
Mibi10g1992 301 MobiDBLite consensus disorder prediction 249 264 - -
Mibi10g1992 301 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Mibi10g1992 301 MobiDBLite consensus disorder prediction 236 301 - -
Mibi10g1992 301 FunFam E3 ubiquitin-protein ligase RING1-like 146 232 - -
Mibi10g1992 301 MobiDBLite consensus disorder prediction 283 301 - -
Mibi10g1992 301 SUPERFAMILY RING/U-box 164 234 - -
Mibi10g1992 301 Pfam Ring finger domain 183 226 IPR001841 -
Mibi10g1992 301 CDD RING-H2_RNF126_like 184 226 - -
Mibi10g1992 301 Pfam zinc-ribbon 16 47 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1992 Mibi-ChrMibi10 43127872 43128777 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1992 129 237 C3H Transcription Factor Family AT5G01980 50.459 2.08e-33 126