Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1983 ATGAATTACTTAACATTGGTCGATGAATCTGTTGAGTATATTGGAGCCACAAATGTTGATGCTGACAGTGAGAGCGGTGAGGACGTATATTCGAGTGATAATCCGCAAGACTCAATTGACTCGAATGTCTCCGTTGTTCCATGTGGGTCCCTTCTCCGCCGGAGAAATATGGCGGAGCCACCATCTCCGACGCCTGAGCAACCGTTGCCGGAATCCGATGACGATCCACAACAGTACTGGTGCTACCACTGCGACAAGCGTGTCTCCGTAGAAACGCATCCTGAAAGCCCTGACATTCTCTGCCGCGACTGCAAGCACGGCTTCGTCGAATCCATTCCCTCGCCGTCTTTACCTCCGCCCTCCACCACTTCTTCCGATCTGATCGACGATCCTCATTTCGAATCGCAATTCCTCCGCGTCCTCCGACTACTCGCCGAGTCGGCGCGTGATGAAGACGCGCCCCCTCCTCCCCCGTCTCGAAGCCGCTCCTCCGGCGATGACTTCCTCAGAGTTGAGTTCGAGGATTGGGACGACGATGAAGAAGAAAGCAGCAACAACAATAACAACGACGACGAAGATGACGAAGACGATAGGGTTGAGTTTCGCGATGAAGGTGAAGAGCACGAAGGTGCTGATGAAGAGCATGAAGATGAGCTAGGGGTAGAGGATTTAAGTGGAGATGAAGGTGAAGAAGATCTGAGAAATAGGAATATGAGGAATCGGATCAGAGATTTGACGAGTCGGATCAGAGATTTGGCAACAGGAACGAGGAGCAGGAGGAACAGGATCTTGGATTGGGCTGATATACTGATGGGGCTTGAAGACAATTCCATAGAACTAAGACTTCAAGTGCCTGATTCCGATCGATTTTTTGGTAATCCGGGGGATTACGTGGATGCTGCTGATTACGAAGCTCTGCTGCTGACGTTGGCAGAGAGCGATGGAAGCGGGAGAAGAGGGGCCCCACCAGCGGCGAAATCTGCGGTGGAGGCGCTGCCGACGGTGGAGGTTGTGTCAGAGGATCAAGCTTTGGTGTGCGCTATTTGCAAAGATATGGTGGGTGTGGGTAGCATGGCAAAGCGATTGCCTTGTGGACATGAGTACCATGGGGATTGCATAGTGCCCTGGTTGGGCTCCAGAAATTCATGCCCAGTTTGCAGGTTTGAGCTTCCAACGGATGATCAGGATTATGAGGAGGAAAAGAAGAAGAATAAGGTGACTGCCACTGCTGCTAATGGGGCATCGGGTTCTGGTGGAACATATGAATAA 1269 0.5162 MNYLTLVDESVEYIGATNVDADSESGEDVYSSDNPQDSIDSNVSVVPCGSLLRRRNMAEPPSPTPEQPLPESDDDPQQYWCYHCDKRVSVETHPESPDILCRDCKHGFVESIPSPSLPPPSTTSSDLIDDPHFESQFLRVLRLLAESARDEDAPPPPPSRSRSSGDDFLRVEFEDWDDDEEESSNNNNNDDEDDEDDRVEFRDEGEEHEGADEEHEDELGVEDLSGDEGEEDLRNRNMRNRIRDLTSRIRDLATGTRSRRNRILDWADILMGLEDNSIELRLQVPDSDRFFGNPGDYVDAADYEALLLTLAESDGSGRRGAPPAAKSAVEALPTVEVVSEDQALVCAICKDMVGVGSMAKRLPCGHEYHGDCIVPWLGSRNSCPVCRFELPTDDQDYEEEKKKNKVTATAANGASGSGGTYE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1983 422 MobiDBLite consensus disorder prediction 171 228 - -
Mibi10g1983 422 MobiDBLite consensus disorder prediction 24 45 - -
Mibi10g1983 422 MobiDBLite consensus disorder prediction 147 231 - -
Mibi10g1983 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 177 391 - -
Mibi10g1983 422 SMART ring_2 346 386 IPR001841 -
Mibi10g1983 422 MobiDBLite consensus disorder prediction 399 422 - -
Mibi10g1983 422 Pfam zinc-ribbon 77 112 IPR039525 GO:0061630
Mibi10g1983 422 ProSiteProfiles Zinc finger RING-type profile. 346 387 IPR001841 -
Mibi10g1983 422 MobiDBLite consensus disorder prediction 408 422 - -
Mibi10g1983 422 FunFam E3 ubiquitin-protein ligase RING1-like 309 393 - -
Mibi10g1983 422 Pfam Zinc finger, C3HC4 type (RING finger) 346 386 - -
Mibi10g1983 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 393 IPR013083 -
Mibi10g1983 422 MobiDBLite consensus disorder prediction 17 74 - -
Mibi10g1983 422 SUPERFAMILY RING/U-box 341 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1983 Mibi-ChrMibi10 43048317 43052005 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1983 257 402 C3H Transcription Factor Family AT5G01980 48.366 1.34e-35 135