Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1958 ATGCATCCTGTTCTGTCCTCCTTGGTGCTGATTCGCCTTCATCGTTCTTTCCGAAGGATCGATCTTTCTGTCACATTCAAGGCGGATGTTGGGTGTGTTACCCAGGAACCTGGCTTCGTTGGTGCTGAGTCTTTGACAGTTCTCTATCTGGTCGGCCAAGGAAAGAAGAGGTATTCAGATTTCATGGCTCAGCTAGAGTGTATAGATATCAGTTCATCGGATGATGATTTGGAGCTGGAGGAGATAGAAAACCCAAATTATGGAAATCGTTCTGGTTGGCCAGCTCGTGAAAGCAATGCTGGTTATGGTGGAGGGCTTACACTTGATAATTCTTTGAGATGGGCAAATGCTTCAAATGCAAGCTCTTCTGGTGCTTACAATCGTTCACTATCTGGGCACTATACTGAACCTGGGTCCAGCGGTTATATGCTCAATCATGGAATTGCACATGGAGATGGATCTTTTAATATTTCAAAGAATGGTTACACAAGTCAGTTTCAGACAGTTAATTCTAGAATTGCTAAATCTTCTGGTGCTGATTATGAGAAAATACCATCACAACAAGCTTTGAAGAGGACCGTTTTATCATCGCCTTCACCAGCTGCAACAAAGCCACTTCCATCTTCGCTTCAGTCTTTTGCACCAGGAATTAGCATGAACAGTGGCAATGATGAACGCATGATGTATCAAAATGGTGGCATTAGGATTCTTCCTCCACCTATGATTCATGGAAAGTCTATCTCTAACACACAGTTAGCTAGTTCAAGTGAAGCTGTATACCGTTCTGGGGCAGGGGAAGAAAGGCCCCCGGAAAACGATGAGAGACTAATTTATCAGGCAGCTCTGGAGGATCTCAATCAGCCAAAAGTTGAAGCTAATTTACCTGATGGTTTATTGTCTGTGTCGCTTTTGAGACATCAGAAAATTGCATTGGCTTGGATGGTACAGAAGGAAACCAGAAGTTTGCATTGCTTGGGGGGGATTCTGGCTGACGATCAAGTGGGCATTTTTATATCTTGTGTGTTTTTATTGTTTGGCCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGGCAACTGCAGTCAAAATCGAAAGAAGATGAGATGCGCAATCATAAAGCTGAAGCATTAAATTTGGATGAGGATGATGAAAATGATAATGTTGGTGATACTAGAAAGAATGAAGAAGATGATATAAAGCCTATTCCTGAATCAGTTAGTTCATCTTCCACAAGGGTGGTTGGCAGGAAAAGACCTGCTGCTGGTACACTGGTTGTTTGCCCTGCTAGTGTTCTCCGACAGTGGGCAAGGGAATTGGATGACAAAGTAGGAGATGAAGCTAAGCTCTCTGTGTTGATTTATCATGGGGGTAATAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTTGTTCTCACCACTTATTCTATTGTAACTAATGAGGTGCCAAAGCAACCTTTAGTTGAAGAGGATGAAATTGATGAAAAAATGGGGGAAAGATTTGGATTATGCTCTGAGTTTGCTTTTGGTAAAAAGAGGAAAAAGGCCTATAATTCTAGTAAAAAGAGTAAAAAGGGTAAAAAGGGACTTGACAGTTCTCTTGAATGTGCATCTGGTACCCTTGCAAAAGTTGGCTGGTTCAGGGTCATTTTAGATGAAGCTCAAACGATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCCATTCAAAATGCTATTGAAGATCTCTATAGCTATTTCAGATTTCTGAAGTATGATCCTTACGCTGTATATAAATCATTCTACAATACAATAAAAGTGCCAATTTCCAAAAATTCTATTCAAGGTTACAAGAAGCTTCAAGCAGTTCTTAGGGCTATAATGCTTCGCCGTACTAAAGGAACATTCATTGATGGACAGCCTATAATCACTCTGCCCCCTAAAACTGTAACGCTGAACCAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTAATCAATTTAAGGCGTATGCTGCTGCTGGTACAGTCAATCAAAATTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCCTGTGACCACCCGCTTCTTGTTAAAGAGTATAGTTCTGATTTCGTTGGGGAGAATTCGATAGAAATGGCAAGAACACTTCCGAAGGAGATGCTTTTGAATCTTTTCAATTGTTTGGAGGCATCCTTTGCAATCTGTAAAGTTTGCAATGATACACCTGAAGATCCAGTTGTTACCATGTGTGGCCATGTTTTCTGTTATCAGTGTGTATCAGAACATTTGACGGGTTATGAGAATATGTGCCCAGCTCCCGATTGTAAAGAACAAATTGGTGATGATGTCGTCTTCTCTAAAGCTACATTAAGAAGTTGCATCTCAGGTGATGCCGGTGACAGTAGTTCCTCAGATTCACGCCTTGTTGATTATTCAGTTGTGCAGCAGAGTAATTACAGTTCATCTAAAATTAAGGCACTCCTTGAGATTCTGGAGCTACATTCGAGTGGCTCTGGTCGTTCGAGAAATTCACTGCCTCCTGAAACTTCAGATACTGAAAACTTGGATTCAGATGTGGTTGTCACAGGGCACACAAGAAAATGTTCAGAGAGCACACCCGAAGGACCAATTAAGGCTATTGTTTTTTCCCAGTGGACTAGCATGTTGGACTTGGTCGAAGATTCACTGAAGGACTCTGGCATTCGATACCGGAGACTTGATGGTACCATGACACTGGTTGCGAGGGATAAGTCTGTTAAGGATTTCAATACTGATCCTGAGGTAACTGTCTTGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAACTTGGTTGCTGCTTGTCATGTTGTTCTCTTAGATCTTTGGTGGAATCCAACAACTGAAGATCAGGCTGTTGATCGAGCTCACAGGATCGGACAGACACGTCCTGTTACTGTGACACGGCTCACCATAAGAGATACAGTTGAAGATAGAATCTTGGCACTCCAGGAAGACAAGAGAAAAATGGTAGCGTCCGCTTTCGGTGAAGATCAAGCAGGTGGAACAGCAACTCGCCTAACCGTGGACGACCTAAAATATCTTTTCATGGTCTGA 3168 0.4227 MHPVLSSLVLIRLHRSFRRIDLSVTFKADVGCVTQEPGFVGAESLTVLYLVGQGKKRYSDFMAQLECIDISSSDDDLELEEIENPNYGNRSGWPARESNAGYGGGLTLDNSLRWANASNASSSGAYNRSLSGHYTEPGSSGYMLNHGIAHGDGSFNISKNGYTSQFQTVNSRIAKSSGADYEKIPSQQALKRTVLSSPSPAATKPLPSSLQSFAPGISMNSGNDERMMYQNGGIRILPPPMIHGKSISNTQLASSSEAVYRSGAGEERPPENDERLIYQAALEDLNQPKVEANLPDGLLSVSLLRHQKIALAWMVQKETRSLHCLGGILADDQVGIFISCVFLLFGLGKTISMIALIQMQRQLQSKSKEDEMRNHKAEALNLDEDDENDNVGDTRKNEEDDIKPIPESVSSSSTRVVGRKRPAAGTLVVCPASVLRQWARELDDKVGDEAKLSVLIYHGGNRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEEDEIDEKMGERFGLCSEFAFGKKRKKAYNSSKKSKKGKKGLDSSLECASGTLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIEDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTFIDGQPIITLPPKTVTLNQVDFSIEERAFYTKLEADSRNQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYSSDFVGENSIEMARTLPKEMLLNLFNCLEASFAICKVCNDTPEDPVVTMCGHVFCYQCVSEHLTGYENMCPAPDCKEQIGDDVVFSKATLRSCISGDAGDSSSSDSRLVDYSVVQQSNYSSSKIKALLEILELHSSGSGRSRNSLPPETSDTENLDSDVVVTGHTRKCSESTPEGPIKAIVFSQWTSMLDLVEDSLKDSGIRYRRLDGTMTLVARDKSVKDFNTDPEVTVLLMSLKAGNLGLNLVAACHVVLLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILALQEDKRKMVASAFGEDQAGGTATRLTVDDLKYLFMV 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1958 1055 CDD SF2_C_SNF 898 1007 - -
Mibi10g1958 1055 MobiDBLite consensus disorder prediction 389 405 - -
Mibi10g1958 1055 Pfam Zinc finger, C3HC4 type (RING finger) 759 795 - -
Mibi10g1958 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 643 IPR027417 -
Mibi10g1958 1055 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 524 655 - -
Mibi10g1958 1055 Pfam Helicase conserved C-terminal domain 902 997 IPR001650 -
Mibi10g1958 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 1054 IPR027417 -
Mibi10g1958 1055 MobiDBLite consensus disorder prediction 860 880 - -
Mibi10g1958 1055 Gene3D - 658 1054 IPR027417 -
Mibi10g1958 1055 MobiDBLite consensus disorder prediction 366 417 - -
Mibi10g1958 1055 SMART helicmild6 914 997 IPR001650 -
Mibi10g1958 1055 Coils Coil 365 385 - -
Mibi10g1958 1055 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 753 809 IPR013083 -
Mibi10g1958 1055 SMART ultradead3 299 622 IPR014001 -
Mibi10g1958 1055 MobiDBLite consensus disorder prediction 366 382 - -
Mibi10g1958 1055 ProSitePatterns Zinc finger RING-type signature. 774 783 IPR017907 -
Mibi10g1958 1055 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 884 1050 IPR001650 -
Mibi10g1958 1055 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 406 495 - -
Mibi10g1958 1055 CDD DEXDc_SHPRH-like 303 643 - -
Mibi10g1958 1055 Gene3D - 409 500 IPR038718 -
Mibi10g1958 1055 ProSiteProfiles Zinc finger RING-type profile. 759 795 IPR001841 -
Mibi10g1958 1055 Pfam SNF2-related domain 306 720 IPR000330 GO:0005524|GO:0140658
Mibi10g1958 1055 SUPERFAMILY RING/U-box 756 806 - -
Mibi10g1958 1055 SMART ring_2 759 799 IPR001841 -
Mibi10g1958 1055 Gene3D - 277 375 IPR038718 -
Mibi10g1958 1055 Gene3D - 514 654 IPR038718 -
Mibi10g1958 1055 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 425 605 IPR014001 -
Mibi10g1958 1055 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 190 1054 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1958 Mibi-ChrMibi10 42845895 42854358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1958 68 955 RAD5 or RAD16-like Gene Family AT1G50410 57.159 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi10g1958 SNF2_N 5.9e-62 CL0023