Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1957 ATGGCTCAACTGGACTCTATATATATTAGTTCATCAGATGACGACCTGGATCTGGAGGAGACTGAAACCTCTAATTATAGGAACCTCCCAGGATGGGCTGCTGGAGGAAGTAATGCTGACGATGGTGGAGGGCATAAGCAGGGTGTTTCTTCTAAACGGGAGAATACTTCGAATGCAAGCTCTTCAAGAGCTTATAATCATTCACACGTCAAGCACAGTACGAAACCTTGGTCTAGCAACAATGTGCTGAGTGACAGGGTGGCACAAAGAGATGGATCTTTCAATATTTCTGGGGACAGTAAAACAAATCAGCATCAGACAGTCGGTTCAAGAATTGATAATACTGGTGCTGACCACGGAAAAATGCCATCCCAACAAGAATCAAAGAGGATGCTTCCATCATATTTTCAGCCATCTACTGGAAAGCCTCTTCCATCTTCTCTCAAGTCATTTCTACCAGATACTAGGTTGAACAGTGCAATGGATAACATGAGCAGAAGCGAGATTCATGATACCTATGGGAATCATCATAATGGTGCAATTAGGATTCTTCCCCCAACTTTCATGCATGGAAAAAACCTACCTGTTATGCAGTTACCTAGTTCGAGCGAATCTACATATCATTCTGCAGCAGGTGAAGAAAGGGTTACGGAAACTGATGAAAGGCTAATTTATCAGGCTGCATTGGAGGACCTCAATCAGCCAAAGATTGAAGCTACTTTACCTGATGGTTTATTGTCTGTGTCACTTCTGAGACATCAGAAAATTGCGTTGGCTTGGATGCTTCAGAAGGAAAACAGAAGTTTGCATTGCTTGGGAGGAATTCTGGCTGATGACCAGGGCCTTGGAAAGACAATTTCGATGATTGCCCTCATACAAATGCAGAGATCGCTGCAGTCAAAATCAAAAACAGATGAGATGTACAGGCATAAAGCTGATGCATTAAATTTGGATGAGGACGATGAAAATGATAAGGGCAATGATACTGTAGGAAAATCTAAAAGGAAAGAAGTTGATGATGTTAAACCTTCTAAATCATTTAGTTCATCTTCAACAAAGGTGCTTGGTAGGAAGAGACCAGCGGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTCCGACAGTGGGCGAGGGAACTGGAAGACAAAGCTGGAGATGAAGCTGAGCTCTCTGTGTTGGTCTATCATGGGGCTAACAGGACAAAGGATCCTGTTGAACTTGCTAGTTATGATGTTGTTCTCACAACATATTCTATTGTGACTACTGAAGTTCCAAAGCAACCTTTAGTGGACGACGATGAAATTGATGAGAAAAATGAGGACAAATTTGGGTTCTCTGATTTTGCTTTTGGTAAGAAGAGGAAAAAGATGCACGAGGAGAATAAAAAGAGTAAAAAGGGTAAAATGGGAATTGACAGCTCTTTTGATTGTGCTTTTGGTCCTCTTGCTCAAGTGGGTTGGTTTAGGGTTGTTCTAGATGAAGCTCAAGTGATAAAGAATCATAGAACTCAGGTGGCCAGAGCTTGCTGCAGCCTTCGAGCCAAAAGAAGGTGGTGTTTATCTGGTACTCCAATTCAAAATACTATAGACGAACTGTATAGCTACTTCAGATTCCTGAAGTATGATCCTTATGCTGAATACAAGTCTTTCTACAATACAATAAAGGTACCGATATCCAAAAATTCTATCCATGGTTACAAGAAACTTCAAGCAGTTCTGAGGGCTATAATGCTACGTCGTACAAAAGGAACATTGATTGATGGGGTGCCTATAGTTGATTTGCCCCCTAAAACAATTCAGCTGAATAAGGTGGATTTCTCCCTTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGAACTCAGTTTAAGGCATATGCTGCTGCTGGTACAGTCAAGCAAAATTATGCAAATATTCTTTTAATGATTTTGCGCCTCCGTCAAGCTTGTGATCACCCATTTCTTGTTAAAGATCGTTGTTCTGATGTCGTTGGGGGAATTTCAGTTGAAATGGCAAAAATGCTTCCAAGGGAGATGCTGATTAATCTTTTTAATTGCTTGGAAACATCCTTTGCCATATGTGGTGTTTGCAATGACCCACCTGAAAATCCAGTTGTTACTATGTGTGGCCATGTTTTCTGTTATAAGTGTATATCAGAATTTTTGACTAGTTATGAGAATATCTGCCCTGCAGTTGAGTGCAATGAAAAAATTGGTGATGATGTTGTTTTCTCCAAATCTACTTTAAGAAGTGGCATCTCTGGTGCCCTCGGTGATGCTAACTCTGAAAGTTATCATAATGTTGATTATTCAGTAGTACAGCAGAGAAATTACTGTTCATCTAAAATCAAAGCAGTCCTTGAGATCCTGCAGTCATATTGTAAAGTAAAGAATCCAGGTTCTGACGGATTGAGTTCTTCAGGATGCAGTAGAGATTCATTTTCTGAAACTTCTGATGATGAAGATTTCTTTTCAGAAGTTCGTCCTTCAAAACACACAAGAAAATATTCAGAATGCTCAACTGAAGGACCAGTAAAGGCTATTGTTTTTTCCCAGTGGAATAGCATGCTGGACTTAGTTGAACAAGCATTGGAAGAGTTCTCTATCACGTACAGGAGACTTGATGGCACCATGACGCTGGCTGCAAGGGATAGAGCTGTTAAGGATTTTAATACCGATCCTGAGGTAATTGTTATGCTGATGTCATTAAAAGCAGGAAACCTTGGTTTAAACATGGCTGCTGCATGTCACGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCCGTTGATCGAGCTCATAGGATTGGACAGATCCGTCCTGTTACTGTGACACGGCTCACCATAAAAGATACTGTTGAGGATAGAATATTGGCTCTTCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTCGGTGAAGATCAAGGTGGGGGCACTGGAAGTCGCCTCACAGTGGACGATCTAAAATATCTTTTCATGGTCTAA 3006 0.4118 MAQLDSIYISSSDDDLDLEETETSNYRNLPGWAAGGSNADDGGGHKQGVSSKRENTSNASSSRAYNHSHVKHSTKPWSSNNVLSDRVAQRDGSFNISGDSKTNQHQTVGSRIDNTGADHGKMPSQQESKRMLPSYFQPSTGKPLPSSLKSFLPDTRLNSAMDNMSRSEIHDTYGNHHNGAIRILPPTFMHGKNLPVMQLPSSSESTYHSAAGEERVTETDERLIYQAALEDLNQPKIEATLPDGLLSVSLLRHQKIALAWMLQKENRSLHCLGGILADDQGLGKTISMIALIQMQRSLQSKSKTDEMYRHKADALNLDEDDENDKGNDTVGKSKRKEVDDVKPSKSFSSSSTKVLGRKRPAAGTLVVCPASVLRQWARELEDKAGDEAELSVLVYHGANRTKDPVELASYDVVLTTYSIVTTEVPKQPLVDDDEIDEKNEDKFGFSDFAFGKKRKKMHEENKKSKKGKMGIDSSFDCAFGPLAQVGWFRVVLDEAQVIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDELYSYFRFLKYDPYAEYKSFYNTIKVPISKNSIHGYKKLQAVLRAIMLRRTKGTLIDGVPIVDLPPKTIQLNKVDFSLEERAFYTKLEADSRTQFKAYAAAGTVKQNYANILLMILRLRQACDHPFLVKDRCSDVVGGISVEMAKMLPREMLINLFNCLETSFAICGVCNDPPENPVVTMCGHVFCYKCISEFLTSYENICPAVECNEKIGDDVVFSKSTLRSGISGALGDANSESYHNVDYSVVQQRNYCSSKIKAVLEILQSYCKVKNPGSDGLSSSGCSRDSFSETSDDEDFFSEVRPSKHTRKYSECSTEGPVKAIVFSQWNSMLDLVEQALEEFSITYRRLDGTMTLAARDRAVKDFNTDPEVIVMLMSLKAGNLGLNMAAACHVILLDLWWNPTTEDQAVDRAHRIGQIRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEDQGGGTGSRLTVDDLKYLFMV 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1957 1001 SMART ring_2 696 734 IPR001841 -
Mibi10g1957 1001 SMART ultradead3 246 550 IPR014001 -
Mibi10g1957 1001 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 460 592 - -
Mibi10g1957 1001 Gene3D - 345 437 IPR038718 -
Mibi10g1957 1001 MobiDBLite consensus disorder prediction 49 127 - -
Mibi10g1957 1001 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 833 996 IPR001650 -
Mibi10g1957 1001 SUPERFAMILY RING/U-box 692 741 - -
Mibi10g1957 1001 MobiDBLite consensus disorder prediction 313 355 - -
Mibi10g1957 1001 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 265 542 IPR014001 -
Mibi10g1957 1001 ProSiteProfiles Zinc finger RING-type profile. 696 732 IPR001841 -
Mibi10g1957 1001 Gene3D - 595 1000 IPR027417 -
Mibi10g1957 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 746 IPR013083 -
Mibi10g1957 1001 MobiDBLite consensus disorder prediction 1 127 - -
Mibi10g1957 1001 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 51 1000 - -
Mibi10g1957 1001 Pfam Zinc finger, C3HC4 type (RING finger) 696 732 - -
Mibi10g1957 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 580 IPR027417 -
Mibi10g1957 1001 MobiDBLite consensus disorder prediction 325 343 - -
Mibi10g1957 1001 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 344 433 - -
Mibi10g1957 1001 CDD SF2_C_SNF 848 953 - -
Mibi10g1957 1001 Pfam Helicase conserved C-terminal domain 844 943 IPR001650 -
Mibi10g1957 1001 Gene3D - 450 593 IPR038718 -
Mibi10g1957 1001 Gene3D - 223 308 IPR038718 -
Mibi10g1957 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 590 1000 IPR027417 -
Mibi10g1957 1001 Pfam SNF2-related domain 253 657 IPR000330 GO:0005524|GO:0140658
Mibi10g1957 1001 CDD DEXDc_SHPRH-like 250 580 - -
Mibi10g1957 1001 ProSitePatterns Zinc finger RING-type signature. 711 720 IPR017907 -
Mibi10g1957 1001 SMART helicmild6 860 943 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1957 Mibi-ChrMibi10 42838219 42844514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1957 4 901 RAD5 or RAD16-like Gene Family AT1G50410 53.509 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi10g1957 SNF2_N 3.6e-67 CL0023