Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1948 ATGCTAGACAATAGTGCTAACTCTTCTGATGCGGCTTCCTCAGAAAATAATGGAGTCATCCTTCCCAAAAGAAAAAGAAGACCCCCAGGCACACCAGATCCAGATGCTGAGGTGGTGTGTTTGTCACCCAAGACTTTGCTGGAATCAGACAGATATGTATGTGAGATCTGTAACCAAGGGTTTCAAAGAGACCAGAATCTTCAGATGCATAGAAGAAGGCATAAGGTACCATGGAAGTTGCTGAAGAGGGAGGGTAATAGTACGCAAGAGGTGAAGAAGAAGGTGTTTGTGTGCCCTGAGCCAACTTGTTTGCACCATAATCCATGCCATGCGCTTGGAGATCTGGTTGGCATAAAGAAGCATTTTAGGAGGAAGCATAGTAATCACAAGCAGTGGGTTTGTGAGAAGTGTTCTAAAGGATATGCTGTTCAGTCAGACTACAAAGCTCACCTCAAAACCTGCGGTACCAGAGGCCATTCCTGTGACTGTGGTCGTGTCTTTTCCAGGGTTGAGAGTTTCATAGAACATCAAGACGCGTGCACTGTTCGAACAGCTTCAAGCAACAGTCCATCGAGTGATCATCAGGCCAATTTAGTTCCATTAATGCAAGGCTTGCCTCTTCCAAAACCACCACCCACATTGTTAACTTCAGACTTACAAAACAATATTATCAAGCCTCCCTACACCACTCATGAGATCAGACATACTAATATCCTAGAAGAACTCCAACTCCTACGTTGTTCTTCTTCATCAGATGCTCGAGGAATCCGAGGTTCTGATCATGATCAGGAGGATACCAACTACCACGAAACTGATCAAACACATCTCAAGCTTTCAATAGGATCATGCAATAACAACAAGAAGAATAATATTGGGAATGAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAGAGAGGGAGGGAAGTGGGGTTTTTGAAAGAATGTGCAAGTGAAGAGCTAAAGTTGGCTGTGGCTGAAAAGGCTTATGCAGAAGAGGCAAGAAGAGAGGCAAAGAGAGAGATAGAGATGGCTGAGATTGAGTTTGGGAAAGCAAAGAGAATAAGGAAGGAAGCTCAGGAGGAGCTTGAGAAAGCTGAGGCTTTGAAGAAGCAAGCAATGATGAAGATTAGTTCAACTTTGATGCAAATTACTTGTCATGCTTGTAAGCAACAATTCCAATCATCCATTAATATTGCTGGTGTTGTTTCATCAGAAGAGACTTCTCTTGCTTATGAGCTGCATGTCCTCACCCACCACTGA 1266 0.4344 MLDNSANSSDAASSENNGVILPKRKRRPPGTPDPDAEVVCLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKREGNSTQEVKKKVFVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRTASSNSPSSDHQANLVPLMQGLPLPKPPPTLLTSDLQNNIIKPPYTTHEIRHTNILEELQLLRCSSSSDARGIRGSDHDQEDTNYHETDQTHLKLSIGSCNNNKKNNIGNEAEEEEEEEEEGERGREVGFLKECASEELKLAVAEKAYAEEARREAKREIEMAEIEFGKAKRIRKEAQEELEKAEALKKQAMMKISSTLMQITCHACKQQFQSSINIAGVVSSEETSLAYELHVLTHH 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1948 421 FunFam protein indeterminate-domain 12-like 31 102 - -
Mibi10g1948 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Mibi10g1948 421 MobiDBLite consensus disorder prediction 255 270 - -
Mibi10g1948 421 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 377 IPR031140 -
Mibi10g1948 421 SMART c2h2final6 52 74 IPR013087 -
Mibi10g1948 421 SMART c2h2final6 96 126 IPR013087 -
Mibi10g1948 421 SMART c2h2final6 132 159 IPR013087 -
Mibi10g1948 421 MobiDBLite consensus disorder prediction 1 37 - -
Mibi10g1948 421 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Mibi10g1948 421 Coils Coil 322 377 - -
Mibi10g1948 421 MobiDBLite consensus disorder prediction 286 309 - -
Mibi10g1948 421 Pfam Zinc finger, C2H2 type 52 74 IPR013087 -
Mibi10g1948 421 Gene3D Classic Zinc Finger 117 196 - -
Mibi10g1948 421 SUPERFAMILY beta-beta-alpha zinc fingers 49 75 IPR036236 -
Mibi10g1948 421 MobiDBLite consensus disorder prediction 251 270 - -
Mibi10g1948 421 MobiDBLite consensus disorder prediction 1 16 - -
Mibi10g1948 421 Coils Coil 284 304 - -
Mibi10g1948 421 Gene3D Classic Zinc Finger 30 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1948 Mibi-ChrMibi10 42700524 42702820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1948 5 406 C2H2 Transcription Factor Family AT1G25250 47.368 2.80e-119 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi10g1948 zf-C2H2 0.0039 CL0361