Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1916 ATGGGGAAGAAGAAGAAGAGGGTTTCTTCCAAGGTTTGGTGTTACTATTGCGATCGCGAATTCGATGACGAGAAGATCTTGGTTCAGCATCAGAAGGCCAAGCACTTCAAATGCCATGTCTGCCACAAGAAGCTCTCCACTGCTGGCGGCATGGCCATTCATGTCCTCCAGGTTCACAAGGAAAGCGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAGTCAACAGATATTGAAATATATGGGATGCAAGGGATTCCACCAGACGTCTTGGCCGCCCATTATGGGGATGAAGATGATGAAGCTCCATCAAAAGCAGCCAAAGTGGATATCCCATCAAGTCAGCTTGTAGGTGGAGTTGTCCCACCATCATTAGGCATGGGATATCCTCCGCATTCAGCCTTGGGTGCTATGCCACCTATTTATAATCCTGCGGTACCTATGCCTCCTGCCACTTGGCCAGTTCCACCTCGACCTCAGTCTTGGTATCCACAGCCTCCATCTGTTTCCATTCCTCCTCCTGCCCCATATGTACAGCAGCCATTATTTCCTGTTCAGAATGTTAGGCCACCTCTACCATCAACCACTTCTCCTGCCCTTCCAACCTCTCAAGTTGCTCCTCCTGGATTGCCTCCAACATCCACTCCAGTTTCACAACCGTTGTTTCCTGTTGTTGGAAATAACCATACCATGGCCCAAAGTTCAACATTTTCTGCCCCACCTCACTCTAGCGGTGTTCCATCTGCATTGCCTGCCAGTGTCCCTGCTGATGCTTATTCAAGTGCCAACACAGCTTTGGCAAATAGTTATCAGGCACTAGGGGTTCCAGGGGGGACATCAAGCAACTCGCATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGACCACCCCCAGTAATTACAAACAAAGCTCCTGTAACTCAACCTGCTACTAATGAGGTCTATTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCCTTGCCAAAATACCAGGTGCATGATGAAACTAGCCAGATGAGCTCCATTGATGCGGCCATAGACAAGAGGATACTTGAAAGCAGGCTAGCAGGTCGAATGGCTTTTTAG 1110 0.4856 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGDEDDEAPSKAAKVDIPSSQLVGGVVPPSLGMGYPPHSALGAMPPIYNPAVPMPPATWPVPPRPQSWYPQPPSVSIPPPAPYVQQPLFPVQNVRPPLPSTTSPALPTSQVAPPGLPPTSTPVSQPLFPVVGNNHTMAQSSTFSAPPHSSGVPSALPASVPADAYSSANTALANSYQALGVPGGTSSNSHSYASGPNTGGPSIGPPPVITNKAPVTQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILESRLAGRMAF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1916 369 Gene3D Classic Zinc Finger 1 66 - -
Mibi10g1916 369 PANTHER ZINC FINGER PROTEIN 207 1 369 - -
Mibi10g1916 369 MobiDBLite consensus disorder prediction 188 249 - -
Mibi10g1916 369 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Mibi10g1916 369 MobiDBLite consensus disorder prediction 219 243 - -
Mibi10g1916 369 MobiDBLite consensus disorder prediction 189 203 - -
Mibi10g1916 369 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Mibi10g1916 369 MobiDBLite consensus disorder prediction 279 309 - -
Mibi10g1916 369 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Mibi10g1916 369 MobiDBLite consensus disorder prediction 204 218 - -
Mibi10g1916 369 SMART c2h2final6 12 35 IPR013087 -
Mibi10g1916 369 SMART c2h2final6 36 59 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1916 1 367 C2H2 Transcription Factor Family AT1G30970 63.281 1.57e-144 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi10g1916 None None None