Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1908 ATGGCTCCCAACTTTCTCTTCCTCCTCTGTTTCTTCCTCTCCTTAATTCATTTCTCCATTTCCCAGAATCCCCTCAATTTCACTTCCTTCAATGCCTCCAACTCCCCATGGCTTCCAAACCAGAATCGCACCCTTCTCTCCCAAAACTCCGTTTTCTCTGCCGGCTTCTTCCCCATTTCCCCAGATCATTACACCTTCTCCGTTTGGTTCACCAACGTCCCTCTCAACGCCGACCCCATCGTCTGGTCTGCAAACTCCGGTTCTCCTGTCACCAGCAACGCTTCCCTCAACATCACCTCCCAAGGTGAGCTTTTTCTCAATAACACCCTCCTAGCAAACGCTTCTTCCGATTCCACATCGCTTGTTCTCACTCTCAGTAACCTAGGCAACTTGAGTTTTGGTGCTTGGAATAGCTTTGCCCACCCAACAGATACGATCCTCCCGAACCAAGCTATCTCAGGAATCGAGCTTCGTTCCCAAAATGGCAACTTTAAGTTTGTCAACTCCACAAATCTCATTTCCATTTCCACCAATCTGAATCTCAATTCCTCTCTGGCTACTTACTACACAACCCCAAAACCGTTGGTGAGCATGGACGACCTTGGCAAGATGACTATGGAAAGTGGGGCTTTTCTTACAAGCGATTACGGCGAAAATCAGTACCGGAAAATCGTTCTTGGAAATGATGGCAACCTCAAAATCTACAGTTTCAACCCTTCTCAAAGAAGCCCTTCTTCTTGGGTGGAGGTTTGGTTGGCCATTTGGGAGCCTTGTAAAATCAAAGGCAAATGTGGTCCTAATGCTATATGCTTGCCTTTGACTGGTATCAATGATTCCACCTCATGTACTTGCCCACCTGGGTTCAGCCAAAATCAAGGATGGCCTCAACAAGGTTGTGCTAGGAAAACCAATCTCACCAACAACATCAAATTCCTAAGGCTGGATTATGTCAACTACACCAGCAACAACATGAGAAACATTGAGGCTAAAAACTTCACAATTTGTGAATCTGATTGCAGATCAAGCCCACAATGTCTAGGGTTTGGCTACAAATATGACGGAACTGGTTTTTGTTCTTTGGTTTTGGATCAACTCCTGTATGGATTTTGGTCTCCCGGTACTGAAGCTTCTTTATTTCTTAAAGTAGACAAATCTGAAACAGAAACCTCAAATTTCACTGGTATGACTGAAATCTTACAAACATCATGCCCTGTTAGAATCAGTCTCCCATTACCACCAAAAGATTCAAACTCCACAGCTAGAAACATAGCCATAATCTGTACTCTCTTCGCAGCTGAGCTAATTTCTGGTATCGCTTTCTTCTGGTCTTTCCTCAAGAGATACATCAAATACAGAGACATGGCTACAACTTTAGGTCTCGAATTCCTTCCTGCCGGTGGCCCTAAACGATTCTCCCATGCCGAGCTCAAAGTCGCCACCAAAAACTTCTCCAACCTCATCGGAAGAGGCGGATTCGGCGATGTTTACAAAGGTGAGTTAACGGATCATCGAATCGTCGCCGTCAAATGCCTCAAAAATGTCGCCGGCGGCGACGCTGAATTCTGGGCAGAGGTCACAATCATCGCCAGAATGCATCATCTCAACTTGGTACGATTGTGGGGATTTTGTGCAGAGAAAGGTCAACGAATCTTGGTTTACGAGTATATTCCTGGTGGATCATTGGACAAATATCTGTTTCGTCGGAATCATCGGGTCGGGTCTAAAGAGTCGGATTCGGGCTCGGATCCGAAGCATGACCCGACTCAAAAGCCCATCCTTGATTGGAATGTTAGGTATAGGATAGCACTTGGGGTGGCAAGGGCTATAGCTTACTTGCATGAGGAGTGTTTGGAGTGGGTTTTGCATTGTGATATTAAGCCGGAGAATATCCTGTTGGGGGATGACTTCTGCCCGAAGATATCGGATTTTGGGCTGGCGAAGCTGAGGAAGAAGGAGGATATGGTGACCATGTCGAGGAGGAGGGGGACGCCGGGTTATATGGCTCCGGAATGGATAACGACGGATCCGATCACATCGAAGGCGGATGTTTACAGTTTTGGGATGGTTTTGTTGGAGTTGGTGAGTGGGGTTAGGAATTTTGAGATTCAAGGGTCGTTGTTGAATAGTGAGGAGTGGTATTTTCCTGGGTGGGCTTTTGATAAGATGTTTAAGGAGATGAGGCCTGAGGATATTCTGGACCGTGAGATTAGGCAGTTGTATGATAGTAGGGCCCATTTTAATATGATCAATAGGATGGTGAAGACGGCCATGTGGTGCCTTCAAGACAGGCCCGAGATGAGGCCCACTATGGGGAAAGTTGCTAAGATGTTGGAAGGCACTGTGGAGATTATTGAGCCCAAGAAGCCCACTGTCTTTTTCCTTGGAGATGAATAG 2394 0.4632 MAPNFLFLLCFFLSLIHFSISQNPLNFTSFNASNSPWLPNQNRTLLSQNSVFSAGFFPISPDHYTFSVWFTNVPLNADPIVWSANSGSPVTSNASLNITSQGELFLNNTLLANASSDSTSLVLTLSNLGNLSFGAWNSFAHPTDTILPNQAISGIELRSQNGNFKFVNSTNLISISTNLNLNSSLATYYTTPKPLVSMDDLGKMTMESGAFLTSDYGENQYRKIVLGNDGNLKIYSFNPSQRSPSSWVEVWLAIWEPCKIKGKCGPNAICLPLTGINDSTSCTCPPGFSQNQGWPQQGCARKTNLTNNIKFLRLDYVNYTSNNMRNIEAKNFTICESDCRSSPQCLGFGYKYDGTGFCSLVLDQLLYGFWSPGTEASLFLKVDKSETETSNFTGMTEILQTSCPVRISLPLPPKDSNSTARNIAIICTLFAAELISGIAFFWSFLKRYIKYRDMATTLGLEFLPAGGPKRFSHAELKVATKNFSNLIGRGGFGDVYKGELTDHRIVAVKCLKNVAGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYIPGGSLDKYLFRRNHRVGSKESDSGSDPKHDPTQKPILDWNVRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITTDPITSKADVYSFGMVLLELVSGVRNFEIQGSLLNSEEWYFPGWAFDKMFKEMRPEDILDREIRQLYDSRAHFNMINRMVKTAMWCLQDRPEMRPTMGKVAKMLEGTVEIIEPKKPTVFFLGDE 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1908 797 SMART serkin_6 481 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi10g1908 797 PIRSF SRK 1 797 IPR024171 GO:0004674
Mibi10g1908 797 FunFam Serine/threonine-protein kinase 556 788 - -
Mibi10g1908 797 FunFam S-receptor-like serine/threonine-protein kinase 453 555 - -
Mibi10g1908 797 ProSitePatterns Protein kinases ATP-binding region signature. 487 509 IPR017441 GO:0005524
Mibi10g1908 797 Pfam S-locus glycoprotein domain 205 290 IPR000858 GO:0048544
Mibi10g1908 797 SUPERFAMILY Protein kinase-like (PK-like) 463 778 IPR011009 -
Mibi10g1908 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 240 IPR036426 -
Mibi10g1908 797 PANTHER OS07G0415500 PROTEIN 5 792 - -
Mibi10g1908 797 Pfam Protein kinase domain 485 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi10g1908 797 SMART blect_4 40 142 IPR001480 -
Mibi10g1908 797 Gene3D Transferase(Phosphotransferase) domain 1 557 788 - -
Mibi10g1908 797 ProSiteProfiles Protein kinase domain profile. 481 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi10g1908 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Mibi10g1908 797 Pfam D-mannose binding lectin 80 153 IPR001480 -
Mibi10g1908 797 ProSiteProfiles Bulb-type lectin domain profile. 30 179 IPR001480 -
Mibi10g1908 797 Gene3D Phosphorylase Kinase; domain 1 456 555 - -
Mibi10g1908 797 ProSiteProfiles PAN/Apple domain profile. 299 383 IPR003609 -
Mibi10g1908 797 CDD STKc_IRAK 487 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1908 Mibi-ChrMibi10 42218109 42220502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1908 322 789 Receptor kinase-like Gene Family AT4G18250 33.128 3.05e-74 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Mibi10g1908 Pkinase 1.6e-46 CL0016