Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1881 ATGGCTGCTTTGCAGAGAGTGACACAGTCAAGCATGACCACTTGTGTGAGCAACTATGGCGTCACCTGTAAAGCTGCTTCAACTATGGAGAAGGTGGTTCCTGATCAGTTCCCAGCTGGTCTGAGGGTTCTTGTTGTGGATGATGACATCACTACTTTGAAAATCATTGAACAAATGTCTCTCAAGTGTCATTATCGCGTCACCACGTGTTCTGAGGCTACTGTAGCTTTAAATCTTCTACGAGAAAAGAAAGGCTGTTTTGATGTAGTACTGAGTGACGTTTACATGCCTGACATGGACGGGTATAAACTACTAGAACATGTTGGGCTCGAGATGGATCTTCCTGTTATCATGATGTCTGCTGACGGTAGAACAAGTGCTGTGATGAAGGGTATTAGACATGGGGCTTGTGACTATTTGATAAAGCCTGTTCGTGAGGAGGAATTGAGGAATATATGGCAGCACGTTGTTAGGAAAATGTGGAATGAAAACAAAGAACATGAAAATTCTGGTAGCTTGGAAGATAATGATAGGAATAAACAAGGAAACGATGATACTGAATATGCTTCATCTGTAATTGATGCGGCAGAAGTAGTTAAAGTGTCAAAAAAGAGGATCAGTTCAAAAGAAGATGATGATGGTGAACTGGAGAATGACGATCCATCTACATCTAAGAAGCCCCGTGTGGTCTGGTCAGTGGAACTGCATCAACAATTTGTCAATGCTGTGAACCAACTGGGGCTTGAGAAGGCTGTGCCAAAGAGAATTCTTGAACTGATGAATGTACCTGGTTTGACAAGAGAAAACGTTGCAAGTCATCTGCAGAAATTTAGGCTTTATTTGAAGAGAATAAGTGGAGTGGCACAGCAACAAAATGGCATTCCAAACACAGCCTCCGGGTCTATGGATTCTAGGCTAGGAGGACTTGGAAGGTTAGACATCCAAGCTCTGGCTGCTGCTGGCCAAGTTCCTCCTCAAACATTAGCAGCCCTTCATGCAGAACTCTTAGGTTGTCCATCCATGGACCAGACTGCTCTTCTGCAAGCTTCCATACAGGGCCCCAAGCATTCCCCTTCAGAACATGCTGTGGCATATGGTCAGCCTCTAGTAAAATGTCCTATCAACATTGCCAAGAATTTTCCTCAATCCATCCTTACTGTGGATGATGCATCTTCAGGCTTTGGGGCATGGCCACCATCTGATACAGTTGATTCAATGGGATCCAATAGTAATCATGGAAGGGTGAGTGTTCAAAATAATAACATGCTGATGGATGTAATGCAGCACCAACAAAGGCAGCAGTTCCAGCAAACACAGCAGCATAAGCTGCAGCAGCAATCACTGATGCACGATCAAAGCCGTTCAGTCAACGTGCAACCATCTTGCTTGGTGGCTCCCTCTCAAACTTCAAGCTCTTTCCAAGTTAATGGTCCTGCTTCGGTCAACCAGAATTCCAGTTTGGCTAGGAATGGCCTTATGGATTATAGTCTCTATGCTTCCCAATCGACTCATCCTTCATTAAATATTGCTCAATTTCCTGGTGGGGACGCCAAGGCTAAAGGTGTTCTTTATGGATATGTGGCTCCAAGCTCCATCTCGCATTCAATTGGTGCTAACAATAGCAATACCCAACAGCTTCACAACTCATCTTTGACATTCGGTACTGTGAGATCTTTGCCAACACTTTCTTCAACTGCATCTGATATGCAAGTTCCCTATGGTGGTACTAAATCTGGTGATGCAATTAATCAAGCGCATGCAAGGAATCTTGGATTTGTTGGCCAAGGTAGCAGTATTCCGAGTAGGTTTGCTGCTCATGAAATTGAATCATCTGTCAGTGACTTAAGTCAGGGAAAAATCCATCTAGATTGCAATGGTAACACAGTGAAGCAGGAACCAAGTATGGATTTTATGGATAACTCAAAGGTGGGCGCACCTGTCTTACAAAGATATCCACCTGATCCCATGAATGTGTTCACTGAATAG 1986 0.4381 MAALQRVTQSSMTTCVSNYGVTCKAASTMEKVVPDQFPAGLRVLVVDDDITTLKIIEQMSLKCHYRVTTCSEATVALNLLREKKGCFDVVLSDVYMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKMWNENKEHENSGSLEDNDRNKQGNDDTEYASSVIDAAEVVKVSKKRISSKEDDDGELENDDPSTSKKPRVVWSVELHQQFVNAVNQLGLEKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRISGVAQQQNGIPNTASGSMDSRLGGLGRLDIQALAAAGQVPPQTLAALHAELLGCPSMDQTALLQASIQGPKHSPSEHAVAYGQPLVKCPINIAKNFPQSILTVDDASSGFGAWPPSDTVDSMGSNSNHGRVSVQNNNMLMDVMQHQQRQQFQQTQQHKLQQQSLMHDQSRSVNVQPSCLVAPSQTSSSFQVNGPASVNQNSSLARNGLMDYSLYASQSTHPSLNIAQFPGGDAKAKGVLYGYVAPSSISHSIGANNSNTQQLHNSSLTFGTVRSLPTLSSTASDMQVPYGGTKSGDAINQAHARNLGFVGQGSSIPSRFAAHEIESSVSDLSQGKIHLDCNGNTVKQEPSMDFMDNSKVGAPVLQRYPPDPMNVFTE 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1881 661 FunFam Two-component response regulator 41 178 - -
Mibi10g1881 661 SUPERFAMILY CheY-like 40 165 IPR011006 -
Mibi10g1881 661 SMART REC_2 41 153 IPR001789 GO:0000160
Mibi10g1881 661 ProSiteProfiles Response regulatory domain profile. 42 157 IPR001789 GO:0000160
Mibi10g1881 661 MobiDBLite consensus disorder prediction 204 225 - -
Mibi10g1881 661 SUPERFAMILY Homeodomain-like 223 283 IPR009057 -
Mibi10g1881 661 Gene3D - 41 222 - -
Mibi10g1881 661 CDD REC_typeB_ARR-like 43 157 - -
Mibi10g1881 661 Gene3D - 223 285 - -
Mibi10g1881 661 PANTHER TWO-COMPONENT RESPONSE REGULATOR 41 431 IPR045279 GO:0009736
Mibi10g1881 661 Pfam Response regulator receiver domain 43 152 IPR001789 GO:0000160
Mibi10g1881 661 MobiDBLite consensus disorder prediction 166 184 - -
Mibi10g1881 661 MobiDBLite consensus disorder prediction 166 189 - -
Mibi10g1881 661 PIRSF RR_ARR_type-B 23 649 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mibi10g1881 661 Pfam Myb-like DNA-binding domain 228 276 IPR001005 -
Mibi10g1881 661 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 223 282 IPR017930 -
Mibi10g1881 661 FunFam Two-component response regulator 222 285 - -
Mibi10g1881 661 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 226 279 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1881 Mibi-ChrMibi10 41885118 41889126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1881 75 341 Response Regulator Gene Family AT3G16857 56.098 4.80e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mibi10g1881 Response_reg 2.6e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi10g1881 10 41885118 41889126 Mibi10g1881 10 41885118 41889126 ECH