Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1878 ATGGCGATGGCGAGGGAGATGGAGGAGGAGGGAGGTGAGGTGAGGAACAACGGTGGGAAGAGGCTGAAATGTATGAAGAAGGAGGAAAAGGAAAAGGAGAAAGGTGAAACAGAGGAGGAGGAGGAGGGTGAAAGTGAGCTTCCTCTTACACCTGGACTCTTCTATTATCCAACTACTCCAACCTCTTTCGTTGTTTCCGATGCTCTTGAACCTGATTTCCCCATCATCTACGTCAACAAGGTCTTTGAATTCCTCACCGGTTATCGCGCCGATGAGGTTTTAGGTCGCAACTGTCGGTTCTTACAATATAGGGACCCCCATGCTCAAAGGAGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGAATTGAGTTCCAAGGTGAACTTTTGAATTTCAGGAAGGATGGCATTCCTTTGGTGAACAGGCTGAGACTTGCTCCAATTCATGATGATGATGGAACTATGACACATATAATAGGCATCCAGCTATTTTCTGAAGCAAATATAGATCTAAATCGTGTCTCATATCCAGTTTTCAAGGAGACCTGCAATCAGGAAATCGATAAAACTGGTAAAAGTTCTTTTAAGAGCGGCCGGCTAGTATACAGCCAGCACCAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAGGTATTGGCTCATAACATCTTATCACGCTTGACACCAAGGGATGTTGCATCTATTGGGTCTGTGTGCAGAAGGATCCGTCAATTAACGCAGAATGAGCACGTTAAAAAGATGGTTTGTCAAAATGCATGGGGAAAAGAAGTAACCGGTGCACTGGAACTGATGACCAGGAAGTTAGGATGGGGTCGTCTTAGCCGAGAACTAACCACTCTTGAGGCAGTGTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTAGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATCGCCTTGTATTGTTTGGAGGTGAAGGAGTTGATATGCAGCCTATGGATGACACTTTTGTCCTCAATCTTGATGCTAAAAATCCCGAGTGGCGTAGGATTAGTGTGAAATCATCCCCACCAGGAAGGTGGGGCCACACACTCTCATGCTTAAATGGTTCTTGGTTGGTGGTATTCGGAGGATGTGGTAGAGAAGGATTGCTAAATGACGTGTTTGTTCTTGATTTGGATGCTCAACAGCCAACATGGAAAGAAGTATGTGGTGGAACCCCACCTCTCCCTAGATCTTGGCACAGCTCTTGCACTCTTGAAGGGTCTAAATTGGTAGTCTCAGGTGGGTGCACAGATGCTGGGGTACTTCTTAGTGACACATACCTACTGGACCTTACTACAGACAATCCAACATGGAGAGAAATTCCAACTTCTTGGGCTCCTCCTTCTCGGTTGGGGCACTCGCTCTCTGTATATGGCAGGACAAAAATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGACTACGATCAGGGGAGGCTTATACGATTGATTTGGAGGATGAAGAACCTCAGTGGAGGCAGCTTGAATGTAGCGCATTCTCAGGAATAGGTGGTCAAAGTGCTGTGGTTCCACCACCTCGTCTAGATCATGTCGCAGTGAGCATGCCTTGTGGGAGAATTATTATTTTTGGAGGTTCCATTGCAGGGCTTCACTCTCCATCCCAGCTCTTTCTTTTGGACCCATCTGAGGAGAAACCATCATGGAGGATCCTCAATGTGCCAGGGCAACCGCCAAAATTTGCTTGGGGTCACAGCACTTGTGTAGTTGGAGGGACTAGGGTTTTGGTTTTGGGTGGACGCACAGGGGAGGAGTGGATACTTAATGAGTTGCATGAGTTATGCTTAGCAAGCAGGCAAGACACCGACCTAAGGTGA 1902 0.4706 MAMAREMEEEGGEVRNNGGKRLKCMKKEEKEKEKGETEEEEEGESELPLTPGLFYYPTTPTSFVVSDALEPDFPIIYVNKVFEFLTGYRADEVLGRNCRFLQYRDPHAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGIPLVNRLRLAPIHDDDGTMTHIIGIQLFSEANIDLNRVSYPVFKETCNQEIDKTGKSSFKSGRLVYSQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTQNEHVKKMVCQNAWGKEVTGALELMTRKLGWGRLSRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGREGLLNDVFVLDLDAQQPTWKEVCGGTPPLPRSWHSSCTLEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEEPQWRQLECSAFSGIGGQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGRTGEEWILNELHELCLASRQDTDLR 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1878 633 SUPERFAMILY F-box domain 213 292 IPR036047 GO:0005515
Mibi10g1878 633 Pfam PAS domain 69 169 IPR000014 -
Mibi10g1878 633 ProSiteProfiles PAS repeat profile. 75 106 IPR000014 -
Mibi10g1878 633 SUPERFAMILY PYP-like sensor domain (PAS domain) 70 170 IPR035965 -
Mibi10g1878 633 Pfam F-box domain 219 256 IPR001810 GO:0005515
Mibi10g1878 633 Gene3D - 495 628 IPR015915 GO:0005515
Mibi10g1878 633 CDD PAS 59 169 IPR000014 -
Mibi10g1878 633 FunFam Putative LOV domain-containing protein 496 628 - -
Mibi10g1878 633 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 38 626 - -
Mibi10g1878 633 Pfam Galactose oxidase, central domain 378 424 - -
Mibi10g1878 633 Pfam Galactose oxidase, central domain 427 478 - -
Mibi10g1878 633 Pfam Galactose oxidase, central domain 313 363 - -
Mibi10g1878 633 Pfam Kelch motif 537 584 IPR011498 GO:0005515
Mibi10g1878 633 MobiDBLite consensus disorder prediction 1 51 - -
Mibi10g1878 633 TIGRFAM sensory_box: PAS domain S-box protein 74 169 IPR000014 -
Mibi10g1878 633 Gene3D PAS domain 56 181 - -
Mibi10g1878 633 SUPERFAMILY Galactose oxidase, central domain 300 617 IPR011043 -
Mibi10g1878 633 MobiDBLite consensus disorder prediction 1 34 - -
Mibi10g1878 633 Gene3D - 290 494 IPR015915 GO:0005515
Mibi10g1878 633 Gene3D - 212 263 - -
Mibi10g1878 633 FunFam Adagio protein 1 52 181 - -
Mibi10g1878 633 FunFam Putative LOV domain-containing protein 290 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1878 Mibi-ChrMibi10 41865401 41869130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1878 62 183 AGC Kinase Gene Family AT5G58140 36.290 6.08e-16 79.7