Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1875 ATGTCATCGGAAACTTCTCCCACCTCGGCGGGTGAACCCCACGCGCCACTCCTTCGTTCCCGTCAGGGTTCTTCTGATGCACCCAGAACTCCAACCCTCGCGCTTCTTCTGGGCCGCGCCGTTGGCCGTCGTGGGCCTTCCATGTTGGTGAGAGAGACGGCGGCTCGTGAGCTTGAAGAAAGGAGGGCAGATTGGGGTTATTCGAAGCCTGTTGTGGTTCTTGATATCTCGTGGAATATGGCCTTTGTGGTTGTTTCTGTTGTGATGCTTCTTTTGACGATTGATGAGAGGCCTGATACTCCGATCCGGGTTTGGATCTGTGGGTATGCGGCTCAGTGCTTGGTTCATGTGGTGCTTGTTTGGCTTGAGTATAGGAGGAGGGCTAGGAGGGTTTCAAGGACCAGGAGGGCTCAAGATGGTGGGGATGTTGAAGCTCGTAATGTTGACGATTTCAATGACAGTGAGGATGAGGAAGCTGGAGATGGGAGCTCCTTGAATTCGTCTGGCGCTGGATTCACGAAACGATGTGAATCAGTGAATACCATGGTTTCATTCCTTTGGTGGATAGTTGGCTTTTATTGGGTGATCTCAGGTGGTGAGATTCTTCTGCAAGATGCTCCACGATTGTATTGGTTGGCTGTTGTTTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGGCCTGCTTGATTGGCATTGCCCTCTGTTGTTGTTTGCCATGCATCATTGCTATTCTCTACGCAGTTGCTGGACAGGAAGGTGCATCAGAAGCAGATCTTAGTCTACTTCCGAAATATAGATTTCGCATGTTAAACAATGAGGAAAAGCCTACTGGTGGTGCAGGATCGATGGTTCCTTTAGAAACAAGTAGTGGGTACCTAGCAAATGAAAGAATACTTCTGCCTGAAGATGCGGAATGCTGTATATGTCTCACTTCATACGAGGATGGAGCAGAACTCAATGCTCTACCATGCAACCATCATTTCCATTCTACATGCATTGTGAAATGGTTGAAAATGAATGCAACTTGTCCTCTCTGCAAGTACAATATTCTTAAGGGAAATGAACAGGTGTGA 1086 0.477 MSSETSPTSAGEPHAPLLRSRQGSSDAPRTPTLALLLGRAVGRRGPSMLVRETAARELEERRADWGYSKPVVVLDISWNMAFVVVSVVMLLLTIDERPDTPIRVWICGYAAQCLVHVVLVWLEYRRRARRVSRTRRAQDGGDVEARNVDDFNDSEDEEAGDGSSLNSSGAGFTKRCESVNTMVSFLWWIVGFYWVISGGEILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSLLPKYRFRMLNNEEKPTGGAGSMVPLETSSGYLANERILLPEDAECCICLTSYEDGAELNALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1875 361 MobiDBLite consensus disorder prediction 1 29 - -
Mibi10g1875 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 359 IPR013083 -
Mibi10g1875 361 SMART ring_2 310 350 IPR001841 -
Mibi10g1875 361 ProSiteProfiles Zinc finger RING-type profile. 310 351 IPR001841 -
Mibi10g1875 361 FunFam E3 ubiquitin protein ligase RIE1 290 358 - -
Mibi10g1875 361 MobiDBLite consensus disorder prediction 144 170 - -
Mibi10g1875 361 SUPERFAMILY RING/U-box 298 355 - -
Mibi10g1875 361 Pfam Ring finger domain 309 351 IPR001841 -
Mibi10g1875 361 PANTHER TARGET OF ERK KINASE MPK-1 40 359 - -
Mibi10g1875 361 CDD RING-H2_RNF111_like 309 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1875 Mibi-ChrMibi10 41843216 41847489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1875 1 360 C3H Transcription Factor Family AT1G68070 69.167 0.0 504