Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1870 ATGGCTTCTCATTCTCATCCGCGTAATGCTGTTCATTTCTTCAAAATCATTCTCCAACGTTCCCTACAACAAGGAAAGCTTAAAGTACCAGATAGCTTTATACGAAAATATGGAAGTGGTATGCCAAATCCAGTGTATATGAAGCCTCCAGATGGGACTAAATGGGAAATACATTGGAATAAATATGAAAATGGTGAGGTTTGGCTTGAAAAAGGTTGGGATGAAGTTATTAGATACTATTCTTTAGGTCATGGCCATTTGGTATTGTTCAAATATGAGAGAGCTAGAACCTGTTACTTTCATGTGAACATTTTTGACAAGAGTGCAGTAGAAATAGACTACCCTCTTCATAGAAACCACATCAAACAAATTAGCGATGGTGATGATTCTGATTCTGATTCTGTTGAAATCATTTATGAGAAACCTCCTCCGCTTAAAGTAGCCAGCCAAAAACCGCCATTATCGCCATCTTTTATTCGGCCTTGCAAGAAAATTAGAGCTCAAGAAGCTGGAAGGAGGTCTAATCAGCAAAAGATGCATTCAGATGGGAATAAGCTCAAGTCCATCGAAGCAGAACCAAATCTTATCAAGTTTAAATCAGAAGAAATCGTAAGTAGAAGCAATTTTTCCACCAAAAAAGGTTCAAAATCCATGGCTATCAAAAACCAAAAGGAGAACCCACTAACTTGTGAAGAGAAGGAAAGAGCTTTACAGAGAGTTAACACTTTCGTGCCCAAAAATCCTTATTTCAAAGTTGTTATGCAGCCAGCATACATCAAGAGCTGTTTGAGTGTACCTGCAGATTTTGCGAAACAGAACTTGAAGCAGGAGAAGGAAGGAAATGTTCTCCTCCGGGTTTCAGATGGTAGAACTTGGCGTGTGAAGTGCAATGGGAAAGAAGGGAAGAAGTACAAGTTTCGACTCCAAAGAGGATGGCCTTCTTTTGTGGAAGACAATAACTTGAAAGTGGGTGATGTGTGTGTTTTTGAACTCACAAACACCATTGATATCTCCTTCCTAGTTCATGTTTTTGGAGATTCTGCAAATCCATATGGCTGA 1059 0.3909 MASHSHPRNAVHFFKIILQRSLQQGKLKVPDSFIRKYGSGMPNPVYMKPPDGTKWEIHWNKYENGEVWLEKGWDEVIRYYSLGHGHLVLFKYERARTCYFHVNIFDKSAVEIDYPLHRNHIKQISDGDDSDSDSVEIIYEKPPPLKVASQKPPLSPSFIRPCKKIRAQEAGRRSNQQKMHSDGNKLKSIEAEPNLIKFKSEEIVSRSNFSTKKGSKSMAIKNQKENPLTCEEKERALQRVNTFVPKNPYFKVVMQPAYIKSCLSVPADFAKQNLKQEKEGNVLLRVSDGRTWRVKCNGKEGKKYKFRLQRGWPSFVEDNNLKVGDVCVFELTNTIDISFLVHVFGDSANPYG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1870 352 Pfam B3 DNA binding domain 13 107 IPR003340 GO:0003677
Mibi10g1870 352 Pfam B3 DNA binding domain 249 344 IPR003340 GO:0003677
Mibi10g1870 352 CDD B3_DNA 12 106 IPR003340 GO:0003677
Mibi10g1870 352 Gene3D - 6 109 IPR015300 -
Mibi10g1870 352 SMART B3_2 13 108 IPR003340 GO:0003677
Mibi10g1870 352 SMART B3_2 249 347 IPR003340 GO:0003677
Mibi10g1870 352 CDD B3_DNA 248 344 IPR003340 GO:0003677
Mibi10g1870 352 Gene3D - 228 347 IPR015300 -
Mibi10g1870 352 ProSiteProfiles B3 DNA-binding domain profile. 12 108 IPR003340 GO:0003677
Mibi10g1870 352 SUPERFAMILY DNA-binding pseudobarrel domain 245 345 IPR015300 -
Mibi10g1870 352 PANTHER B3 DOMAIN-CONTAINING 5 342 - -
Mibi10g1870 352 ProSiteProfiles B3 DNA-binding domain profile. 248 347 IPR003340 GO:0003677
Mibi10g1870 352 SUPERFAMILY DNA-binding pseudobarrel domain 9 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1870 Mibi-ChrMibi10 41798838 41800197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1870 13 344 B3 DNA Binding Superfamily AT3G18990 29.714 2.25e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mibi10g1870 B3 4.7e-21 CL0405