LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi10g1828	ATGACCAAACCTCACAGTTTTCTTCATAATCTGATTAAACCCTTCAAATTTGGTTCTGGTAAAGAGGAAAGCAACGAAGAAGAGTTAGAGAGAATTGCTGCCCAGGAGCAGAAGATCTTTCTTTACGAAACCTTACTTGCAGCTACCAAAAATTTTCATTCTCATCATAAGCTTGGTGAGGGAGGTTTTGGACCCGTCTTCAAGGGGAAGTTGGATGATGGAAGAGAGATTGCAGTAAAGAAGTTATCACAAAGCTCAAATCAAGGAAACAAAGAGTTCATGAATGAGGCCAAGTTGTTGGCTCGTGTGCAGCATCGGAATGTGGTGAATTTGTTGGGTTATTGTGTCCATGGCACAGAGAAGTTACTAGTGTATGAGTATGTTCCTCATGAGAGCCTTGACAAGCTTTTATTCAAATCTCACAGAAGAGAGCAGCTAGATTGGAAAAGGAGGTTTGACGTAATCACAGGTATAGCAAGGGGCTTACTCTATCTTCATGAAGACTCGCATAGCTGCATCATCCACAGAGACATCAAGGCCAGTAACATCTTGCTCGATGATAAATGGATGCCCAAGATTGCAGACTTTGGTATGGCTCGTCTCTTCCCTGAGGACCAAACTCACGTTAATACACGTGTCGCTGGCACCAATGGATATATGGCTCCAGAGTATGTGATGCATGGACATTTATCAGTGAAGGCAGATGTGTTTAGCTATGGGGTATTGGTGCTGGAGCTAATAAGTGGCCAAAGAAACTCAATGTTTAGCCTTGAGGTGGATGCACATAATCTCCTTGATTGGTCATACAAGCTTTACAAGAAAGGGAGGAGCTTAGATATGCTTGACCCTGCAGTAGCAGATTCAGCAGTAGAAGATCAAGTAACGATGTGCATACAACTGGGTCTGCTGTGCGTTCAAGGGGACCCACAGCTCCGGCCAAGCATGCGGCGGGTGGTGGTGATGCTATCAAAGAAGCCGGGCCACATGGACGAGCCGACTAGACCAGGACTTCCTGGTTCCAGATACAGAAGACCTCGCAGGCCATCTACGTTTTCTACTGCAGCTGGTACTTCTGGTGCTGATTCTGATTCTCGGACTTCAGACTCGAGCAGTAACTATACTACCACCGCAACAACGCCAAGAACAAGCTCCTCCACTCGAGAAGTTGACACTCGAGGAAAACGTCCCATGCATGAGGCTTAG	1203	0.4589	MTKPHSFLHNLIKPFKFGSGKEESNEEELERIAAQEQKIFLYETLLAATKNFHSHHKLGEGGFGPVFKGKLDDGREIAVKKLSQSSNQGNKEFMNEAKLLARVQHRNVVNLLGYCVHGTEKLLVYEYVPHESLDKLLFKSHRREQLDWKRRFDVITGIARGLLYLHEDSHSCIIHRDIKASNILLDDKWMPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSVKADVFSYGVLVLELISGQRNSMFSLEVDAHNLLDWSYKLYKKGRSLDMLDPAVADSAVEDQVTMCIQLGLLCVQGDPQLRPSMRRVVVMLSKKPGHMDEPTRPGLPGSRYRRPRRPSTFSTAAGTSGADSDSRTSDSSSNYTTTATTPRTSSSTREVDTRGKRPMHEA	400

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi10g1828	400	SUPERFAMILY	Protein kinase-like (PK-like)	37	335	IPR011009	-
	Mibi10g1828	400	FunFam	Cysteine-rich receptor-like protein kinase 10	129	334	-	-
	Mibi10g1828	400	CDD	STKc_IRAK	58	324	-	-
	Mibi10g1828	400	MobiDBLite	consensus disorder prediction	346	386	-	-
	Mibi10g1828	400	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	25	378	-	-
	Mibi10g1828	400	Pfam	Protein tyrosine and serine/threonine kinase	54	321	IPR001245	GO:0004672\|GO:0006468
	Mibi10g1828	400	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	173	185	IPR008271	GO:0004672\|GO:0006468
	Mibi10g1828	400	Gene3D	Phosphorylase Kinase; domain 1	16	127	-	-
	Mibi10g1828	400	SMART	serkin_6	52	322	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi10g1828	400	MobiDBLite	consensus disorder prediction	322	400	-	-
	Mibi10g1828	400	FunFam	Cysteine-rich receptor-like protein kinase 10	16	127	-	-
	Mibi10g1828	400	Gene3D	Transferase(Phosphotransferase) domain 1	128	332	-	-
	Mibi10g1828	400	ProSiteProfiles	Protein kinase domain profile.	52	337	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi10g1828	Mibi-ChrMibi10	41268348	41272491	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi10g1828	42	338	Receptor kinase-like Gene Family	AT4G23230	51.678	4.41e-111	337

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Mibi10g1828		PK_Tyr_Ser-Thr	2.7e-50	CL0016