Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g1780 ATGGATTTTCTTGCAAATCCATGCCCTTTGCCTCTCTCTCTTCTGTTTTCCTTACGGAATTGCGTTGAAAGGGTTAAACAGATTAGCAGCCTCGCGTTTTCTGCCATCGTCGGCAACATCTTCTCTGCGATCTTGACTTTCTGCTTTGCTTTAGTGGGAACGTTGTTGGGAGCTATGACTGGAGCGTTGATAGGCCAAGAGACAGAGAGTGGCTTCATTAGAGGAGCTGCTGTAGGAGCCATATCAGGGGCTGTATTTTCCCTTGAAGTGTTTGAATCTTCTCTTGTCCTTTGGCAAACCGATGAATCTGGGATTGGGTGTCTCTTGTACTTGATTGATGTTATTACTAGCCTACTGAGTGGGAGACTGGTCCGTGAGAGGATAGGTCCAGCCATGCTAAGCGCTGTCCAAAGCCAGATGGGTGCTGTTGAAGCTAGCTTTGATGAGATTCAAAACCTCTTTGACACTGGAGGTTCCAAAGGTTTATCAGGAGATTTAGTTGAAAAAATTCCAATAATAACAATCACAGGTGACGAAAATGTTGATGCTTGTGGTGAGAGAGTTTCCTGTTCAGTTTGCCTCCAGGATTTTCAGGTTGGAGAGACAGTTAGAATATTGCCTCATTGCCATCACATGTTTCACCTACCTTGTATAGATAAGTGGCTCTTCAGGCATGGTTCCTGCCCATTGTGCAGAAGAGATCTGTAG 708 0.4506 MDFLANPCPLPLSLLFSLRNCVERVKQISSLAFSAIVGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSLEVFESSLVLWQTDESGIGCLLYLIDVITSLLSGRLVRERIGPAMLSAVQSQMGAVEASFDEIQNLFDTGGSKGLSGDLVEKIPIITITGDENVDACGERVSCSVCLQDFQVGETVRILPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g1780 235 CDD RING-H2_PA-TM-RING 190 232 - -
Mibi10g1780 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 23 234 IPR044523 -
Mibi10g1780 235 SUPERFAMILY RING/U-box 189 235 - -
Mibi10g1780 235 Pfam Ring finger domain 189 232 IPR001841 -
Mibi10g1780 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Mibi10g1780 235 SMART ring_2 190 231 IPR001841 -
Mibi10g1780 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 235 IPR013083 -
Mibi10g1780 235 FunFam NEP1-interacting protein-like 1 150 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g1780 Mibi-ChrMibi10 39139083 39141721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g1780 20 235 C3H Transcription Factor Family AT5G66070 75.000 2.78e-114 324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g2117 12 37566344 37568254 Mibi10g1780 10 39139083 39141721 CCT